Wall clock time and date at job start Mon Mar 30 2020 03:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 110.38571 * 2 1 4 4 S 1.83390 * 110.34311 * 122.22993 * 2 1 3 5 5 C 1.83989 * 95.85130 * 138.62136 * 4 2 1 6 6 C 1.55157 * 100.94809 * 324.62714 * 5 4 2 7 7 C 1.53055 * 108.90223 * 41.42769 * 6 5 4 8 8 H 1.08998 * 108.87668 * 90.71484 * 7 6 5 9 9 C 1.52998 * 108.76480 * 209.19119 * 7 6 5 10 10 C 1.50698 * 109.47263 * 297.92859 * 9 7 6 11 11 H 1.08003 * 120.00056 * 359.97438 * 10 9 7 12 12 C 1.37882 * 120.00231 * 180.02562 * 10 9 7 13 13 N 1.31517 * 119.99802 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00128 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47141 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47365 * 119.99914 * 14 12 10 17 17 H 1.48508 * 109.47044 * 239.99984 * 14 12 10 18 18 H 1.09005 * 109.46787 * 299.22022 * 1 2 3 19 19 H 1.08993 * 109.47211 * 59.22355 * 1 2 3 20 20 H 1.09006 * 109.46851 * 179.22719 * 1 2 3 21 21 H 1.08996 * 109.46896 * 180.77691 * 3 2 1 22 22 H 1.08997 * 109.46828 * 300.77871 * 3 2 1 23 23 H 1.09007 * 109.47084 * 60.77486 * 3 2 1 24 24 H 1.09002 * 111.13136 * 82.56066 * 5 4 2 25 25 H 1.08998 * 111.13167 * 206.69485 * 5 4 2 26 26 H 1.09004 * 109.60267 * 161.39078 * 6 5 4 27 27 H 1.09002 * 109.60500 * 281.52979 * 6 5 4 28 28 H 1.09001 * 109.47366 * 57.93044 * 9 7 6 29 29 H 1.09005 * 109.46920 * 177.93037 * 9 7 6 30 30 H 0.96994 * 119.99629 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 16 2.1676 -0.9170 1.4546 5 6 3.5205 -1.7797 0.5542 6 6 2.8502 -2.0210 -0.8241 7 6 2.0642 -0.7685 -1.2193 8 1 2.7157 -0.1099 -1.7937 9 6 0.8834 -1.1853 -2.0984 10 6 1.3988 -1.8319 -3.3583 11 1 2.4622 -1.9349 -3.5164 12 6 0.5127 -2.2912 -4.3096 13 7 -0.7822 -2.1654 -4.1173 14 14 1.1515 -3.0933 -5.8710 15 1 2.6361 -3.1140 -5.8452 16 1 0.6381 -4.4840 -5.9588 17 1 0.6881 -2.3191 -7.0505 18 1 -0.3633 0.5017 0.8970 19 1 -0.3633 0.5258 -0.8829 20 1 -0.3633 -1.0276 -0.0139 21 1 3.1528 1.4168 -0.0139 22 1 1.6966 1.9579 -0.8829 23 1 1.7192 1.9496 0.8969 24 1 4.3983 -1.1406 0.4578 25 1 3.7754 -2.7227 1.0377 26 1 3.6160 -2.2247 -1.5726 27 1 2.1725 -2.8721 -0.7572 28 1 0.2587 -1.8945 -1.5553 29 1 0.2942 -0.3053 -2.3564 30 1 -1.4055 -2.4881 -4.7867 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535648324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:04 Heat of formation + Delta-G solvation = -25.033252 kcal Electronic energy + Delta-G solvation = -11422.031920 eV Core-core repulsion = 9535.486637 eV Total energy + Delta-G solvation = -1886.545283 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -37.57289 -32.84748 -32.16249 -29.14063 -26.81711 -24.97599 -22.24252 -21.77501 -18.37529 -16.48255 -15.78272 -14.75481 -14.42919 -13.82578 -13.60640 -12.95482 -12.70142 -12.39797 -12.23063 -11.64861 -11.36759 -10.99060 -10.89176 -10.69907 -10.55329 -10.39784 -10.09728 -9.93060 -9.42437 -8.99741 -8.93108 -8.35914 -7.27433 -6.03057 -4.05113 2.35795 2.81917 3.28139 3.36349 3.39314 4.42810 5.14303 5.26325 5.33648 5.42205 5.43283 5.63453 5.75329 6.00756 6.01860 6.16178 6.27461 6.31770 6.40357 6.48168 6.72865 6.79374 6.89268 7.05718 7.63125 7.76404 7.95731 8.38072 9.00936 9.58916 11.07880 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.049940 B = 0.010335 C = 0.009455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.543070 B = 2708.588887 C = 2960.776867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.003 3.997 3 C -0.128 4.128 4 S -0.331 6.331 5 C -0.067 4.067 6 C -0.103 4.103 7 C -0.087 4.087 8 H 0.065 0.935 9 C 0.032 3.968 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.285 1.285 18 H 0.043 0.957 19 H 0.075 0.925 20 H 0.072 0.928 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.094 0.906 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.562 3.252 6.821 9.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.106 4.106 3 C -0.187 4.187 4 S -0.103 6.103 5 C -0.215 4.215 6 C -0.142 4.142 7 C -0.107 4.107 8 H 0.083 0.917 9 C -0.006 4.006 10 C -0.558 4.558 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.211 1.211 18 H 0.062 0.938 19 H 0.093 0.907 20 H 0.091 0.909 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.113 0.887 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.055 3.172 7.928 9.923 hybrid contribution 0.669 -0.466 -2.073 2.227 sum 5.724 2.706 5.855 8.624 Atomic orbital electron populations 1.21901 0.91828 1.03600 1.01093 1.23310 0.98741 0.96259 0.92313 1.21987 1.00697 0.94280 1.01714 1.87419 1.41369 1.59490 1.22030 1.24343 0.97243 1.01550 0.98354 1.22352 0.99064 0.99760 0.93010 1.21837 0.99726 0.94790 0.94320 0.91667 1.19376 0.91500 0.96683 0.93016 1.21310 0.92827 1.38528 1.03143 0.92715 1.24996 0.94871 0.96120 0.98313 1.69964 1.01140 1.47077 1.35072 0.86597 0.79032 0.79177 0.83565 1.19807 1.21044 1.21070 0.93836 0.90660 0.90856 0.92610 0.91728 0.92597 0.90212 0.88720 0.90781 0.90293 0.95744 0.95920 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 7.41 37.16 0.28 -2.00 16 2 C 0.00 0.05 1.17 -90.25 -0.11 -0.05 16 3 C -0.13 -1.95 8.38 37.16 0.31 -1.64 16 4 S -0.33 -5.77 22.10 -107.50 -2.38 -8.14 16 5 C -0.07 -1.04 7.52 38.30 0.29 -0.75 16 6 C -0.10 -1.90 5.05 -25.56 -0.13 -2.02 16 7 C -0.09 -1.73 2.37 -90.23 -0.21 -1.94 16 8 H 0.06 1.30 7.62 -51.93 -0.40 0.91 16 9 C 0.03 0.77 3.10 -27.89 -0.09 0.69 16 10 C -0.52 -14.03 8.54 -34.44 -0.29 -14.32 16 11 H 0.05 1.44 7.25 -52.48 -0.38 1.06 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 14 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 19 H 0.07 1.40 6.64 -51.93 -0.34 1.05 16 20 H 0.07 1.45 6.73 -51.93 -0.35 1.10 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.07 1.33 7.82 -51.93 -0.41 0.92 16 27 H 0.08 1.59 7.76 -51.93 -0.40 1.18 16 28 H 0.02 0.64 6.71 -51.93 -0.35 0.30 16 29 H 0.02 0.59 6.53 -51.93 -0.34 0.25 16 30 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 249.46 15.07 3.76 3.76 Total: -1.00 -28.43 249.46 -7.59 -36.02 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.64 Total: -1.93 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -0.05 Total: -20.52 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.74 Total: -25.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -5.77 SS G_CDS: -2.38 Total: -8.14 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.43 -7.59 -36.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535648324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.990 kcal (2) G-P(sol) polarization free energy of solvation -28.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds