Wall clock time and date at job start Mon Mar 30 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 110.38571 * 2 1 4 4 S 1.83390 * 110.34311 * 122.22993 * 2 1 3 5 5 C 1.83989 * 95.85130 * 138.62136 * 4 2 1 6 6 C 1.55157 * 100.94809 * 324.62714 * 5 4 2 7 7 C 1.53055 * 108.90223 * 41.42769 * 6 5 4 8 8 H 1.08998 * 108.87668 * 90.71484 * 7 6 5 9 9 C 1.52998 * 108.76480 * 209.19119 * 7 6 5 10 10 C 1.50698 * 109.47263 * 297.92859 * 9 7 6 11 11 H 1.08003 * 120.00056 * 359.97438 * 10 9 7 12 12 C 1.37882 * 120.00231 * 180.02562 * 10 9 7 13 13 N 1.31517 * 119.99802 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00128 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47141 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47365 * 119.99914 * 14 12 10 17 17 H 1.48508 * 109.47044 * 239.99984 * 14 12 10 18 18 H 1.09005 * 109.46787 * 299.22022 * 1 2 3 19 19 H 1.08993 * 109.47211 * 59.22355 * 1 2 3 20 20 H 1.09006 * 109.46851 * 179.22719 * 1 2 3 21 21 H 1.08996 * 109.46896 * 180.77691 * 3 2 1 22 22 H 1.08997 * 109.46828 * 300.77871 * 3 2 1 23 23 H 1.09007 * 109.47084 * 60.77486 * 3 2 1 24 24 H 1.09002 * 111.13136 * 82.56066 * 5 4 2 25 25 H 1.08998 * 111.13167 * 206.69485 * 5 4 2 26 26 H 1.09004 * 109.60267 * 161.39078 * 6 5 4 27 27 H 1.09002 * 109.60500 * 281.52979 * 6 5 4 28 28 H 1.09001 * 109.47366 * 57.93044 * 9 7 6 29 29 H 1.09005 * 109.46920 * 177.93037 * 9 7 6 30 30 H 0.96994 * 119.99629 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 16 2.1676 -0.9170 1.4546 5 6 3.5205 -1.7797 0.5542 6 6 2.8502 -2.0210 -0.8241 7 6 2.0642 -0.7685 -1.2193 8 1 2.7157 -0.1099 -1.7937 9 6 0.8834 -1.1853 -2.0984 10 6 1.3988 -1.8319 -3.3583 11 1 2.4622 -1.9349 -3.5164 12 6 0.5127 -2.2912 -4.3096 13 7 -0.7822 -2.1654 -4.1173 14 14 1.1515 -3.0933 -5.8710 15 1 2.6361 -3.1140 -5.8452 16 1 0.6381 -4.4840 -5.9588 17 1 0.6881 -2.3191 -7.0505 18 1 -0.3633 0.5017 0.8970 19 1 -0.3633 0.5258 -0.8829 20 1 -0.3633 -1.0276 -0.0139 21 1 3.1528 1.4168 -0.0139 22 1 1.6966 1.9579 -0.8829 23 1 1.7192 1.9496 0.8969 24 1 4.3983 -1.1406 0.4578 25 1 3.7754 -2.7227 1.0377 26 1 3.6160 -2.2247 -1.5726 27 1 2.1725 -2.8721 -0.7572 28 1 0.2587 -1.8945 -1.5553 29 1 0.2942 -0.3053 -2.3564 30 1 -1.4055 -2.4881 -4.7867 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535648324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:00 Heat of formation + Delta-G solvation = -40.075940 kcal Electronic energy + Delta-G solvation = -11422.684220 eV Core-core repulsion = 9535.486637 eV Total energy + Delta-G solvation = -1887.197583 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.14538 -34.86167 -33.61257 -30.92838 -28.25230 -26.76944 -23.98652 -23.26322 -19.96593 -18.53485 -17.18087 -16.60818 -16.05345 -15.36452 -15.14157 -14.37189 -14.27491 -13.92089 -13.84697 -13.19712 -13.08796 -12.84983 -12.57685 -12.29716 -12.16643 -11.94986 -11.67311 -11.52290 -11.10422 -10.96240 -10.59288 -10.42389 -8.63830 -8.16487 -6.25575 0.99903 1.39451 1.40840 1.46508 1.52507 2.42000 3.17168 3.70885 3.83857 4.03088 4.07506 4.27439 4.43201 4.65806 4.72083 4.74009 4.85095 4.90418 4.97019 5.15337 5.19127 5.21562 5.32709 5.40401 5.56321 5.77804 5.88071 6.28502 6.90615 7.42778 8.94935 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.049940 B = 0.010335 C = 0.009455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.543070 B = 2708.588887 C = 2960.776867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.002 3.998 3 C -0.122 4.122 4 S -0.344 6.344 5 C -0.051 4.051 6 C -0.102 4.102 7 C -0.082 4.082 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.531 4.531 11 H 0.061 0.939 12 C 0.002 3.998 13 N -0.932 5.932 14 Si 0.956 3.044 15 H -0.261 1.261 16 H -0.282 1.282 17 H -0.281 1.281 18 H 0.063 0.937 19 H 0.062 0.938 20 H 0.046 0.954 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.054 0.946 28 H -0.005 1.005 29 H 0.000 1.000 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.441 3.457 7.068 10.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.107 4.107 3 C -0.181 4.181 4 S -0.117 6.117 5 C -0.199 4.199 6 C -0.141 4.141 7 C -0.102 4.102 8 H 0.086 0.914 9 C 0.005 3.995 10 C -0.570 4.570 11 H 0.079 0.921 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.782 3.218 15 H -0.185 1.185 16 H -0.208 1.208 17 H -0.207 1.207 18 H 0.082 0.918 19 H 0.081 0.919 20 H 0.065 0.935 21 H 0.086 0.914 22 H 0.083 0.917 23 H 0.088 0.912 24 H 0.123 0.877 25 H 0.134 0.866 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.013 0.987 29 H 0.018 0.982 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.950 3.381 8.183 11.256 hybrid contribution 0.055 -0.544 -2.125 2.195 sum 7.005 2.837 6.057 9.685 Atomic orbital electron populations 1.21809 0.92680 1.01942 1.01506 1.23273 0.98186 0.97687 0.91602 1.21950 1.01383 0.92300 1.02484 1.87471 1.42523 1.59929 1.21752 1.24384 0.96826 1.02878 0.95783 1.22247 0.98733 0.97923 0.95225 1.21744 0.97933 0.95817 0.94696 0.91397 1.19169 0.92612 0.94746 0.92950 1.21731 0.93163 1.38111 1.03953 0.92096 1.25876 0.95047 0.96873 1.01814 1.70097 1.02462 1.48373 1.36329 0.85529 0.78992 0.77972 0.79353 1.18488 1.20844 1.20737 0.91793 0.91883 0.93478 0.91390 0.91669 0.91163 0.87716 0.86616 0.90208 0.92759 0.98720 0.98209 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 7.41 71.98 0.53 -3.90 16 2 C 0.00 0.06 1.17 -10.55 -0.01 0.05 16 3 C -0.12 -3.47 8.38 71.98 0.60 -2.86 16 4 S -0.34 -11.32 22.10 -56.49 -1.25 -12.57 16 5 C -0.05 -1.44 7.52 72.72 0.55 -0.89 16 6 C -0.10 -3.64 5.05 31.35 0.16 -3.48 16 7 C -0.08 -3.22 2.37 -10.54 -0.03 -3.24 16 8 H 0.07 2.63 7.62 -2.39 -0.02 2.61 16 9 C 0.04 2.14 3.10 29.85 0.09 2.24 16 10 C -0.53 -28.90 8.54 25.60 0.22 -28.68 16 11 H 0.06 3.17 7.25 -2.91 -0.02 3.14 16 12 C 0.00 0.08 5.46 84.66 0.46 0.55 16 13 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 14 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 15 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 19 H 0.06 2.42 6.64 -2.39 -0.02 2.41 16 20 H 0.05 1.94 6.73 -2.38 -0.02 1.92 16 21 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.08 2.72 7.82 -2.39 -0.02 2.70 16 27 H 0.05 2.18 7.76 -2.39 -0.02 2.16 16 28 H -0.01 -0.31 6.71 -2.39 -0.02 -0.32 16 29 H 0.00 -0.02 6.53 -2.38 -0.02 -0.03 16 30 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -60.69 249.46 4.73 -55.96 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.09 Total: 6.76 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 2.58 Total: -40.22 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.28 Total: -55.50 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -11.32 SS G_CDS: -1.25 Total: -12.57 kcal Total: -60.69 4.73 -55.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535648324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.880 kcal (2) G-P(sol) polarization free energy of solvation -60.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds