Wall clock time and date at job start Mon Mar 30 2020 03:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.61814 * 2 1 4 4 H 1.09006 * 109.46781 * 60.22468 * 3 2 1 5 5 O 1.42904 * 109.47205 * 180.22418 * 3 2 1 6 6 C 1.50696 * 109.47032 * 300.22503 * 3 2 1 7 7 H 1.07995 * 120.00233 * 0.02562 * 6 3 2 8 8 C 1.37886 * 119.99951 * 180.02562 * 6 3 2 9 9 N 1.31513 * 119.99953 * 179.97438 * 8 6 3 10 10 Si 1.86793 * 119.99970 * 359.97438 * 8 6 3 11 11 H 1.48496 * 109.47171 * 90.00067 * 10 8 6 12 12 H 1.48507 * 109.47173 * 210.00321 * 10 8 6 13 13 H 1.48501 * 109.47051 * 330.00059 * 10 8 6 14 14 C 1.53181 * 109.54249 * 120.22398 * 2 1 3 15 15 C 1.53096 * 109.16280 * 62.88490 * 14 2 1 16 16 O 1.42905 * 109.41382 * 57.60845 * 15 14 2 17 17 C 1.42902 * 114.09583 * 298.83698 * 16 15 14 18 18 C 1.53090 * 109.41282 * 61.16326 * 17 16 15 19 19 H 1.09009 * 109.47010 * 299.77866 * 1 2 3 20 20 H 1.09001 * 109.47324 * 59.77338 * 1 2 3 21 21 H 1.08998 * 109.47213 * 179.78119 * 1 2 3 22 22 H 0.96693 * 113.99631 * 60.00329 * 5 3 2 23 23 H 0.96997 * 119.99946 * 179.97438 * 9 8 6 24 24 H 1.08998 * 109.52547 * 302.97690 * 14 2 1 25 25 H 1.09004 * 109.52249 * 182.78570 * 14 2 1 26 26 H 1.08996 * 109.47593 * 177.59033 * 15 14 2 27 27 H 1.09001 * 109.48107 * 297.61277 * 15 14 2 28 28 H 1.09003 * 109.47624 * 181.14087 * 17 16 15 29 29 H 1.09000 * 109.48246 * 301.17851 * 17 16 15 30 30 H 1.09005 * 109.52564 * 62.29704 * 18 17 16 31 31 H 1.09001 * 109.51975 * 182.47992 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0437 1.4411 0.0000 4 1 1.6849 1.9547 0.8921 5 8 3.4727 1.4375 -0.0053 6 6 1.5386 2.1544 -1.2276 7 1 0.9134 1.6322 -1.9367 8 6 1.8747 3.4738 -1.4456 9 7 1.4344 4.0961 -2.5172 10 14 2.9555 4.3772 -0.2189 11 1 4.3814 4.2099 -0.5982 12 1 2.6083 5.8211 -0.2226 13 1 2.7359 3.8188 1.1395 14 6 2.0424 -0.7267 1.2473 15 6 1.5894 -2.1883 1.1991 16 8 2.0735 -2.7963 -0.0001 17 6 1.5893 -2.1882 -1.1992 18 6 2.0423 -0.7267 -1.2473 19 1 -0.3633 0.5104 0.8920 20 1 -0.3634 0.5173 -0.8879 21 1 -0.3633 -1.0276 -0.0039 22 1 3.8620 0.9959 -0.7723 23 1 1.6705 5.0244 -2.6704 24 1 1.6373 -0.2490 2.1394 25 1 3.1313 -0.6835 1.2725 26 1 1.9872 -2.7207 2.0629 27 1 0.5003 -2.2320 1.2150 28 1 1.9871 -2.7207 -2.0630 29 1 0.5003 -2.2319 -1.2148 30 1 3.1312 -0.6834 -1.2726 31 1 1.6371 -0.2490 -2.1394 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535767280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:02 Heat of formation + Delta-G solvation = -132.771876 kcal Electronic energy + Delta-G solvation = -13976.279899 eV Core-core repulsion = 11642.309848 eV Total energy + Delta-G solvation = -2333.970051 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.98643 -38.03882 -34.94295 -34.41428 -31.98464 -29.80125 -28.05029 -25.72532 -24.47503 -22.85130 -19.43241 -19.36797 -17.38502 -16.95411 -16.72461 -15.98949 -15.89458 -15.57597 -15.12791 -14.77137 -14.26350 -13.74971 -13.25062 -13.14875 -12.78563 -12.69892 -12.56494 -12.05988 -12.02583 -11.83842 -11.54485 -11.15674 -10.86033 -10.83705 -10.48687 -9.93338 -8.31978 -6.42639 1.38837 1.41461 1.55750 2.38574 3.02130 3.05111 3.80897 3.95838 3.99658 4.11273 4.22158 4.39088 4.50249 4.55901 4.76376 4.83398 4.87652 4.97597 5.05333 5.12549 5.24991 5.30161 5.34587 5.45744 5.64817 5.74051 6.16368 6.33996 6.69395 7.14306 7.36034 8.81446 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.053427 B = 0.012016 C = 0.011205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.949007 B = 2329.591651 C = 2498.299437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C 0.203 3.797 4 H 0.045 0.955 5 O -0.590 6.590 6 C -0.540 4.540 7 H 0.054 0.946 8 C 0.027 3.973 9 N -0.938 5.938 10 Si 0.965 3.035 11 H -0.279 1.279 12 H -0.307 1.307 13 H -0.266 1.266 14 C -0.139 4.139 15 C 0.062 3.938 16 O -0.399 6.399 17 C 0.064 3.936 18 C -0.134 4.134 19 H 0.050 0.950 20 H 0.043 0.957 21 H 0.066 0.934 22 H 0.369 0.631 23 H 0.265 0.735 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.121 -11.302 6.228 12.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.077 4.077 3 C 0.145 3.855 4 H 0.063 0.937 5 O -0.398 6.398 6 C -0.578 4.578 7 H 0.073 0.927 8 C -0.172 4.172 9 N -0.579 5.579 10 Si 0.794 3.206 11 H -0.205 1.205 12 H -0.235 1.235 13 H -0.190 1.190 14 C -0.177 4.177 15 C -0.014 4.014 16 O -0.319 6.319 17 C -0.012 4.012 18 C -0.172 4.172 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.085 0.915 22 H 0.218 0.782 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.125 0.875 27 H 0.078 0.922 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.148 -11.000 6.703 12.882 hybrid contribution 0.252 1.063 -0.450 1.181 sum 0.400 -9.937 6.253 11.748 Atomic orbital electron populations 1.21780 0.94232 1.01040 1.01628 1.20981 0.96207 0.95396 0.95146 1.19817 0.78072 0.92427 0.95157 0.93690 1.86303 1.22901 1.81143 1.49460 1.21869 1.31511 0.96492 1.07889 0.92748 1.25751 0.96298 0.98665 0.96469 1.70061 1.46871 1.12120 1.28817 0.85428 0.79315 0.75344 0.80505 1.20527 1.23494 1.19046 1.22168 1.01516 0.96378 0.97608 1.22710 0.98855 0.92368 0.87495 1.87846 1.72589 1.56872 1.14555 1.22663 0.98679 0.92357 0.87531 1.22074 1.00900 0.95985 0.98230 0.93052 0.93761 0.91486 0.78220 0.92645 0.91035 0.91846 0.87456 0.92183 0.87884 0.92454 0.92042 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 7.68 71.98 0.55 -3.87 16 2 C -0.08 -2.76 0.36 -52.06 -0.02 -2.78 16 3 C 0.20 9.11 1.66 29.84 0.05 9.16 16 4 H 0.05 2.16 7.20 -2.38 -0.02 2.14 16 5 O -0.59 -26.03 10.27 -148.98 -1.53 -27.56 16 6 C -0.54 -28.94 7.93 25.60 0.20 -28.74 16 7 H 0.05 3.14 5.95 -2.91 -0.02 3.12 16 8 C 0.03 1.57 5.47 84.66 0.46 2.03 16 9 N -0.94 -57.34 13.96 21.45 0.30 -57.04 16 10 Si 0.97 47.90 26.18 68.60 1.80 49.70 16 11 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 13 H -0.27 -12.90 6.54 99.48 0.65 -12.25 16 14 C -0.14 -4.26 4.82 30.69 0.15 -4.11 16 15 C 0.06 1.59 6.57 72.01 0.47 2.06 16 16 O -0.40 -11.64 10.77 -148.98 -1.60 -13.24 16 17 C 0.06 1.79 6.57 72.01 0.47 2.27 16 18 C -0.13 -4.57 4.37 30.68 0.13 -4.44 16 19 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 20 H 0.04 1.74 6.61 -2.39 -0.02 1.72 16 21 H 0.07 1.89 5.01 -2.39 -0.01 1.88 16 22 H 0.37 14.76 7.25 -74.06 -0.54 14.22 16 23 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 2.08 7.60 -2.38 -0.02 2.06 16 26 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.06 1.40 6.61 -2.39 -0.02 1.38 16 28 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.06 1.50 6.60 -2.39 -0.02 1.49 16 30 H 0.06 2.09 6.63 -2.38 -0.02 2.08 16 31 H 0.06 2.40 6.77 -2.39 -0.02 2.38 16 Total: -1.00 -62.73 234.45 1.97 -60.75 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 0.54 Total: 15.82 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 2.48 Total: -28.43 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.30 Total: -57.04 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -3.13 Total: -40.80 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.80 Total: 49.70 kcal Total: -62.73 1.97 -60.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535767280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.019 kcal (2) G-P(sol) polarization free energy of solvation -62.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds