Wall clock time and date at job start Mon Mar 30 2020 02:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35016 * 126.40023 * 2 1 4 4 N 1.30519 * 108.72556 * 179.97438 * 3 2 1 5 5 C 1.34161 * 109.27810 * 359.97438 * 4 3 2 6 6 Cl 1.73603 * 125.99902 * 180.02562 * 5 4 3 7 7 C 1.34751 * 108.00281 * 0.02562 * 5 4 3 8 8 C 1.50693 * 126.60490 * 180.26516 * 7 5 4 9 9 C 1.50704 * 109.47315 * 269.68599 * 8 7 5 10 10 H 1.08007 * 119.99072 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00431 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99821 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 119.99985 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47199 * 90.00387 * 13 11 9 15 15 H 1.48506 * 109.47061 * 210.00320 * 13 11 9 16 16 H 1.48502 * 109.47144 * 330.00077 * 13 11 9 17 17 H 1.08996 * 109.46814 * 270.02245 * 1 2 3 18 18 H 1.08998 * 109.47074 * 30.02084 * 1 2 3 19 19 H 1.08998 * 109.47089 * 150.02492 * 1 2 3 20 20 H 1.07999 * 125.63873 * 359.97438 * 3 2 1 21 21 H 1.09002 * 109.47310 * 29.67893 * 8 7 5 22 22 H 1.08999 * 109.47589 * 149.68595 * 8 7 5 23 23 H 0.96996 * 119.99770 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0867 0.0000 4 7 3.5098 0.6905 0.0006 5 6 3.5474 -0.6506 0.0015 6 17 4.9799 -1.6313 0.0031 7 6 2.2780 -1.1028 0.0009 8 6 1.8374 -2.5439 0.0072 9 6 1.6863 -3.0292 -1.4115 10 1 1.8886 -2.3606 -2.2353 11 6 1.2887 -4.3262 -1.6578 12 7 1.1573 -4.7497 -2.8960 13 14 0.9381 -5.4822 -0.2331 14 1 -0.4936 -5.3788 0.1475 15 1 1.2424 -6.8773 -0.6411 16 1 1.7869 -5.1095 0.9271 17 1 -0.3633 0.0004 1.0276 18 1 -0.3633 0.8898 -0.5141 19 1 -0.3633 -0.8902 -0.5134 20 1 1.9332 2.1141 -0.0004 21 1 2.5839 -3.1498 0.5208 22 1 0.8817 -2.6294 0.5242 23 1 0.8780 -5.6623 -3.0693 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536189445.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:08 Heat of formation + Delta-G solvation = 47.570229 kcal Electronic energy + Delta-G solvation = -10696.357332 eV Core-core repulsion = 8571.543228 eV Total energy + Delta-G solvation = -2124.814104 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.55890 -35.78643 -33.76987 -33.07566 -30.95258 -27.15233 -26.46149 -22.74842 -20.92837 -19.38251 -16.94695 -16.60736 -15.24563 -14.39876 -14.24396 -13.72886 -13.09006 -12.84635 -12.47834 -12.09873 -11.82095 -11.00611 -10.81840 -10.69100 -10.49516 -10.15335 -9.56552 -9.36630 -8.95761 -8.66473 -7.52670 -6.15063 -4.15735 2.54286 2.67494 3.21217 3.31375 3.33939 3.45209 3.50455 4.33697 5.08007 5.14656 5.17174 5.42491 5.52947 5.78913 6.04106 6.48396 6.74215 6.94971 7.16647 7.51851 7.62864 8.36669 8.41985 8.88922 9.43471 10.97631 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.033982 B = 0.013763 C = 0.011182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.760197 B = 2033.967291 C = 2503.400396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.457 5.457 3 C 0.166 3.834 4 N -0.488 5.488 5 C 0.024 3.976 6 Cl -0.023 7.023 7 C 0.069 3.931 8 C 0.050 3.950 9 C -0.514 4.514 10 H 0.074 0.926 11 C 0.074 3.926 12 N -0.895 5.895 13 Si 0.873 3.127 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.262 1.262 17 H 0.071 0.929 18 H 0.083 0.917 19 H 0.099 0.901 20 H 0.205 0.795 21 H 0.048 0.952 22 H 0.023 0.977 23 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 7.448 7.143 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.141 5.141 3 C -0.115 4.115 4 N -0.209 5.209 5 C -0.128 4.128 6 Cl 0.005 6.995 7 C -0.049 4.049 8 C 0.011 3.989 9 C -0.552 4.552 10 H 0.092 0.908 11 C -0.128 4.128 12 N -0.533 5.533 13 Si 0.699 3.301 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.187 1.187 17 H 0.089 0.911 18 H 0.101 0.899 19 H 0.118 0.882 20 H 0.221 0.779 21 H 0.066 0.934 22 H 0.041 0.959 23 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.229 7.725 7.027 10.515 hybrid contribution -0.799 -1.154 0.520 1.497 sum -2.028 6.571 7.547 10.210 Atomic orbital electron populations 1.22036 0.76365 1.05327 1.03042 1.45163 1.07764 1.06403 1.54774 1.24530 0.84753 0.93465 1.08744 1.69759 1.20173 1.10671 1.20286 1.20157 0.87155 0.89204 1.16307 1.98299 1.36823 1.66736 1.97662 1.21417 0.88846 0.91298 1.03296 1.18368 0.96776 0.84277 0.99445 1.20801 1.46700 0.97767 0.89968 0.90815 1.24928 0.94693 0.97672 0.95501 1.69888 1.46979 1.17549 1.18845 0.86880 0.79046 0.80737 0.83397 1.20167 1.20958 1.18673 0.91056 0.89863 0.88227 0.77884 0.93381 0.95862 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.87 59.85 0.65 1.63 14 2 N -0.46 -8.08 3.15 -121.31 -0.38 -8.47 14 3 C 0.17 2.77 12.56 -90.38 -1.14 1.64 14 4 N -0.49 -9.96 11.25 -11.80 -0.13 -10.10 14 5 C 0.02 0.54 7.70 -17.77 -0.14 0.40 14 6 Cl -0.02 -0.48 28.91 -51.86 -1.50 -1.98 14 7 C 0.07 1.49 6.15 -81.52 -0.50 0.99 14 8 C 0.05 1.16 3.98 -29.04 -0.12 1.05 14 9 C -0.51 -14.11 9.65 -34.44 -0.33 -14.44 14 10 H 0.07 2.27 7.98 -52.48 -0.42 1.85 14 11 C 0.07 2.08 5.47 -17.82 -0.10 1.98 14 12 N -0.89 -26.66 13.96 55.43 0.77 -25.89 14 13 Si 0.87 20.55 27.47 -169.99 -4.67 15.88 14 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 14 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 14 16 H -0.26 -5.95 6.54 56.52 0.37 -5.58 14 17 H 0.07 0.77 8.14 -51.93 -0.42 0.34 14 18 H 0.08 0.81 8.14 -51.93 -0.42 0.39 14 19 H 0.10 1.49 7.82 -51.93 -0.41 1.09 14 20 H 0.20 2.32 8.06 -52.49 -0.42 1.89 14 21 H 0.05 1.15 6.99 -51.93 -0.36 0.78 14 22 H 0.02 0.51 7.31 -51.93 -0.38 0.13 14 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 14 LS Contribution 224.64 15.07 3.39 3.39 Total: -1.00 -31.95 224.64 -6.20 -38.15 By element: Atomic # 1 Polarization: -2.21 SS G_CDS: -2.00 Total: -4.22 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.67 Total: -6.76 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.26 Total: -44.45 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.95 -6.20 -38.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536189445.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.718 kcal (2) G-P(sol) polarization free energy of solvation -31.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds