Wall clock time and date at job start Mon Mar 30 2020 02:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35016 * 126.40023 * 2 1 4 4 N 1.30519 * 108.72556 * 179.97438 * 3 2 1 5 5 C 1.34161 * 109.27810 * 359.97438 * 4 3 2 6 6 Cl 1.73603 * 125.99902 * 180.02562 * 5 4 3 7 7 C 1.34751 * 108.00281 * 0.02562 * 5 4 3 8 8 C 1.50693 * 126.60490 * 180.26516 * 7 5 4 9 9 C 1.50704 * 109.47315 * 269.68599 * 8 7 5 10 10 H 1.08007 * 119.99072 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00431 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99821 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 119.99985 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.47199 * 90.00387 * 13 11 9 15 15 H 1.48506 * 109.47061 * 210.00320 * 13 11 9 16 16 H 1.48502 * 109.47144 * 330.00077 * 13 11 9 17 17 H 1.08996 * 109.46814 * 270.02245 * 1 2 3 18 18 H 1.08998 * 109.47074 * 30.02084 * 1 2 3 19 19 H 1.08998 * 109.47089 * 150.02492 * 1 2 3 20 20 H 1.07999 * 125.63873 * 359.97438 * 3 2 1 21 21 H 1.09002 * 109.47310 * 29.67893 * 8 7 5 22 22 H 1.08999 * 109.47589 * 149.68595 * 8 7 5 23 23 H 0.96996 * 119.99770 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0867 0.0000 4 7 3.5098 0.6905 0.0006 5 6 3.5474 -0.6506 0.0015 6 17 4.9799 -1.6313 0.0031 7 6 2.2780 -1.1028 0.0009 8 6 1.8374 -2.5439 0.0072 9 6 1.6863 -3.0292 -1.4115 10 1 1.8886 -2.3606 -2.2353 11 6 1.2887 -4.3262 -1.6578 12 7 1.1573 -4.7497 -2.8960 13 14 0.9381 -5.4822 -0.2331 14 1 -0.4936 -5.3788 0.1475 15 1 1.2424 -6.8773 -0.6411 16 1 1.7869 -5.1095 0.9271 17 1 -0.3633 0.0004 1.0276 18 1 -0.3633 0.8898 -0.5141 19 1 -0.3633 -0.8902 -0.5134 20 1 1.9332 2.1141 -0.0004 21 1 2.5839 -3.1498 0.5208 22 1 0.8817 -2.6294 0.5242 23 1 0.8780 -5.6623 -3.0693 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536189445.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:06 Heat of formation + Delta-G solvation = 27.098373 kcal Electronic energy + Delta-G solvation = -10697.245058 eV Core-core repulsion = 8571.543228 eV Total energy + Delta-G solvation = -2125.701830 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.00436 -37.39025 -35.54901 -34.67884 -32.80845 -28.86390 -27.69199 -24.67172 -22.35711 -20.92045 -19.03798 -18.00931 -16.68893 -16.24974 -15.76663 -15.25075 -14.84343 -14.17670 -14.02807 -13.69174 -13.37349 -12.63657 -12.52873 -12.47217 -12.13647 -11.95114 -11.67022 -10.95740 -10.77092 -10.37828 -9.11374 -8.29531 -6.35868 1.03458 1.16342 1.36537 1.41600 1.51910 2.00641 2.13731 2.35372 3.04862 3.88249 4.04161 4.13935 4.39654 4.50664 4.77805 4.90206 5.00763 5.34668 5.45302 5.54996 6.19681 6.33622 6.68205 6.94005 7.27376 8.86927 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.033982 B = 0.013763 C = 0.011182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.760197 B = 2033.967291 C = 2503.400396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.457 5.457 3 C 0.197 3.803 4 N -0.524 5.524 5 C 0.006 3.994 6 Cl -0.030 7.030 7 C 0.034 3.966 8 C 0.060 3.940 9 C -0.513 4.513 10 H 0.023 0.977 11 C 0.017 3.983 12 N -0.945 5.945 13 Si 0.943 3.057 14 H -0.257 1.257 15 H -0.285 1.285 16 H -0.247 1.247 17 H 0.100 0.900 18 H 0.122 0.878 19 H 0.074 0.926 20 H 0.261 0.739 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 8.504 8.955 12.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.140 5.140 3 C -0.086 4.086 4 N -0.245 5.245 5 C -0.146 4.146 6 Cl -0.002 7.002 7 C -0.084 4.084 8 C 0.022 3.978 9 C -0.552 4.552 10 H 0.042 0.958 11 C -0.181 4.181 12 N -0.585 5.585 13 Si 0.765 3.235 14 H -0.181 1.181 15 H -0.211 1.211 16 H -0.170 1.170 17 H 0.119 0.881 18 H 0.140 0.860 19 H 0.093 0.907 20 H 0.277 0.723 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.512 8.793 8.851 12.727 hybrid contribution -0.420 -1.328 -0.117 1.398 sum -2.932 7.465 8.734 11.858 Atomic orbital electron populations 1.22376 0.73630 1.06062 1.05218 1.45445 1.09392 1.05402 1.53735 1.25664 0.83538 0.95115 1.04235 1.69768 1.22428 1.09770 1.22571 1.20436 0.87236 0.90179 1.16751 1.98281 1.37190 1.67069 1.97681 1.21151 0.89617 0.91652 1.05982 1.18102 0.97426 0.85705 0.96567 1.20894 1.46090 0.97224 0.90942 0.95823 1.25854 0.94384 0.99522 0.98364 1.70045 1.48670 1.18256 1.21543 0.85771 0.80058 0.77731 0.79916 1.18104 1.21103 1.17006 0.88123 0.85955 0.90727 0.72348 0.93968 0.93937 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.54 10.87 127.77 1.39 2.92 14 2 N -0.46 -14.97 3.15 -537.73 -1.70 -16.67 14 3 C 0.20 5.87 12.56 180.27 2.26 8.13 14 4 N -0.52 -20.51 11.25 -191.23 -2.15 -22.66 14 5 C 0.01 0.28 7.70 83.54 0.64 0.92 14 6 Cl -0.03 -1.27 28.91 -2.72 -0.08 -1.34 14 7 C 0.03 1.46 6.15 40.95 0.25 1.71 14 8 C 0.06 2.79 3.98 29.10 0.12 2.90 14 9 C -0.51 -28.75 9.65 25.60 0.25 -28.50 14 10 H 0.02 1.51 7.98 -2.91 -0.02 1.49 14 11 C 0.02 0.93 5.47 84.65 0.46 1.40 14 12 N -0.95 -57.76 13.96 21.45 0.30 -57.46 14 13 Si 0.94 41.90 27.47 68.60 1.88 43.78 14 14 H -0.26 -10.57 7.11 99.48 0.71 -9.86 14 15 H -0.29 -12.68 7.11 99.48 0.71 -11.97 14 16 H -0.25 -10.26 6.54 99.48 0.65 -9.61 14 17 H 0.10 1.72 8.14 -2.39 -0.02 1.70 14 18 H 0.12 1.81 8.14 -2.39 -0.02 1.79 14 19 H 0.07 2.11 7.82 -2.39 -0.02 2.09 14 20 H 0.26 4.38 8.06 -2.91 -0.02 4.36 14 21 H 0.04 1.98 6.99 -2.39 -0.02 1.96 14 22 H 0.04 1.78 7.31 -2.39 -0.02 1.76 14 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 14 Total: -1.00 -71.45 224.64 4.79 -66.67 By element: Atomic # 1 Polarization: -2.95 SS G_CDS: 1.16 Total: -1.80 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 5.37 Total: -10.52 kcal Atomic # 7 Polarization: -93.24 SS G_CDS: -3.55 Total: -96.79 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.88 Total: 43.78 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.34 kcal Total: -71.45 4.79 -66.67 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536189445.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.764 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds