Wall clock time and date at job start Mon Mar 30 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00381 * 2 1 4 4 C 1.38212 * 120.00072 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99912 * 359.74588 * 4 3 2 6 6 C 1.38215 * 119.99870 * 0.51219 * 5 4 3 7 7 C 1.50701 * 119.99765 * 179.76108 * 6 5 4 8 8 H 1.09002 * 109.47060 * 179.72679 * 7 6 5 9 9 C 1.47201 * 109.47125 * 59.72718 * 7 6 5 10 10 N 5.49745 * 141.89351 * 141.07693 * 2 1 3 11 11 C 1.50699 * 109.47269 * 299.72532 * 7 6 5 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 7 6 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 7 6 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 7 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 7 16 16 H 1.48500 * 109.47256 * 90.00491 * 15 13 11 17 17 H 1.48506 * 109.46930 * 210.00332 * 15 13 11 18 18 H 1.48499 * 109.47104 * 330.00193 * 15 13 11 19 19 C 1.38217 * 119.99571 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.46664 * 270.01916 * 1 2 3 21 21 H 1.08998 * 109.46739 * 30.01341 * 1 2 3 22 22 H 1.08996 * 109.47636 * 150.01662 * 1 2 3 23 23 H 1.08000 * 119.99539 * 0.02562 * 3 2 1 24 24 H 1.08004 * 119.99799 * 180.02562 * 4 3 2 25 25 H 1.08004 * 119.99654 * 180.27379 * 5 4 3 26 26 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 27 27 H 1.07993 * 120.00370 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5805 -1.1971 0.0010 7 6 4.3340 -2.5022 0.0019 8 1 3.6256 -3.3307 0.0020 9 6 5.1798 -2.5796 1.2042 10 7 5.8327 -2.6394 2.1315 11 6 5.2009 -2.5827 -1.2282 12 1 5.2060 -1.7699 -1.9393 13 6 5.9882 -3.6936 -1.4452 14 7 5.9823 -4.6832 -0.5790 15 14 7.0632 -3.7930 -2.9696 16 1 8.3975 -3.2126 -2.6731 17 1 7.2199 -5.2137 -3.3730 18 1 6.4268 -3.0320 -4.0746 19 6 2.1980 -1.1970 0.0005 20 1 -0.3632 0.0003 1.0277 21 1 -0.3633 0.8899 -0.5140 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6583 2.1326 0.0004 24 1 4.1205 2.1325 0.0010 25 1 5.3517 -0.0002 0.0113 26 1 6.5359 -5.4649 -0.7319 27 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041168309.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:38 Heat of formation + Delta-G solvation = 30.074437 kcal Electronic energy + Delta-G solvation = -11871.859287 eV Core-core repulsion = 9786.833791 eV Total energy + Delta-G solvation = -2085.025497 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.94352 -35.55505 -33.31056 -32.27709 -31.21842 -27.81083 -26.34829 -23.89282 -21.57629 -20.31831 -17.36454 -16.04882 -15.48768 -14.90419 -14.50434 -14.00004 -13.44367 -12.95562 -12.72448 -12.49960 -11.95715 -11.81516 -11.55339 -11.26349 -11.14969 -10.95794 -10.77379 -10.49552 -10.45863 -9.71266 -9.43577 -8.70142 -8.22569 -7.98160 -6.28542 -4.39818 1.93371 1.97150 3.21930 3.29201 3.31891 4.18836 4.31360 4.38215 4.45150 5.06462 5.24477 5.30743 5.51667 5.64688 5.80471 5.83851 5.96704 6.04254 6.12068 6.31437 6.56374 6.64787 6.95997 7.04035 7.08696 7.46454 7.59325 7.67508 7.88697 8.62958 9.20907 9.30235 10.79075 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.009871 C = 0.009281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.151073 B = 2836.033762 C = 3016.193769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.122 4.122 5 C -0.109 4.109 6 C -0.036 4.036 7 C 0.161 3.839 8 H 0.076 0.924 9 C 0.267 3.733 10 N -0.517 5.517 11 C -0.520 4.520 12 H 0.075 0.925 13 C 0.066 3.934 14 N -0.876 5.876 15 Si 0.905 3.095 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.268 1.268 19 C -0.118 4.118 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.121 0.879 26 H 0.269 0.731 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.486 7.916 -2.015 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.096 4.096 3 C -0.157 4.157 4 C -0.141 4.141 5 C -0.127 4.127 6 C -0.038 4.038 7 C 0.140 3.860 8 H 0.094 0.906 9 C -0.049 4.049 10 N -0.196 5.196 11 C -0.559 4.559 12 H 0.094 0.906 13 C -0.139 4.139 14 N -0.512 5.512 15 Si 0.732 3.268 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.136 4.136 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.129 0.871 24 H 0.132 0.868 25 H 0.139 0.861 26 H 0.079 0.921 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.431 7.621 -0.574 10.660 hybrid contribution 0.540 -0.228 -1.189 1.325 sum -6.891 7.393 -1.763 10.260 Atomic orbital electron populations 1.20726 0.91881 1.02240 1.01722 1.19786 0.95471 0.93315 1.01010 1.20823 0.94212 0.96914 1.03746 1.21046 0.94180 0.97713 1.01119 1.21094 1.00301 0.91775 0.99520 1.20021 0.93111 0.95448 0.95184 1.15630 0.91946 0.91384 0.87057 0.90632 1.29974 0.92673 0.89980 0.92254 1.80824 1.12450 1.11632 1.14650 1.20903 1.25779 1.04541 1.04633 0.90642 1.25118 0.96568 0.95224 0.97026 1.69919 1.38815 1.07268 1.35168 0.86363 0.80538 0.77533 0.82406 1.20423 1.20913 1.19287 1.20955 0.93650 0.97317 1.01676 0.91768 0.92145 0.91719 0.87088 0.86847 0.86073 0.92118 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 36.00 0.36 -0.90 15 2 C -0.10 -1.46 5.88 -104.62 -0.62 -2.08 15 3 C -0.14 -2.07 9.70 -39.58 -0.38 -2.45 15 4 C -0.12 -1.98 10.05 -39.58 -0.40 -2.37 15 5 C -0.11 -2.08 8.81 -39.58 -0.35 -2.43 15 6 C -0.04 -0.74 4.71 -104.62 -0.49 -1.23 15 7 C 0.16 3.81 2.36 -95.71 -0.23 3.58 15 8 H 0.08 1.80 7.88 -51.93 -0.41 1.39 15 9 C 0.27 6.88 12.97 -20.77 -0.27 6.61 15 10 N -0.52 -13.97 18.54 42.14 0.78 -13.19 15 11 C -0.52 -13.20 8.22 -34.44 -0.28 -13.48 15 12 H 0.08 1.87 7.61 -52.49 -0.40 1.47 15 13 C 0.07 1.73 5.30 -17.82 -0.09 1.64 15 14 N -0.88 -24.40 12.37 55.43 0.69 -23.71 15 15 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 15 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 19 C -0.12 -2.07 9.33 -39.58 -0.37 -2.43 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.06 0.61 8.09 -51.93 -0.42 0.19 15 22 H 0.06 0.70 8.09 -51.93 -0.42 0.28 15 23 H 0.11 1.35 8.06 -52.49 -0.42 0.92 15 24 H 0.11 1.53 8.06 -52.48 -0.42 1.11 15 25 H 0.12 2.40 8.04 -52.48 -0.42 1.98 15 26 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 27 H 0.12 1.92 7.95 -52.49 -0.42 1.51 15 LS Contribution 249.32 15.07 3.76 3.76 Total: -1.00 -28.94 249.32 -5.81 -34.75 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -2.89 Total: -1.38 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -3.12 Total: -15.55 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 1.47 Total: -36.90 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.94 -5.81 -34.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041168309.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.825 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds