Wall clock time and date at job start Mon Mar 30 2020 01:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 120.00381 * 2 1 4 4 C 1.38212 * 120.00072 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99912 * 359.74588 * 4 3 2 6 6 C 1.38215 * 119.99870 * 0.51219 * 5 4 3 7 7 C 1.50701 * 119.99765 * 179.76108 * 6 5 4 8 8 H 1.09002 * 109.47060 * 179.72679 * 7 6 5 9 9 C 1.47201 * 109.47125 * 59.72718 * 7 6 5 10 10 N 5.49745 * 141.89351 * 141.07693 * 2 1 3 11 11 C 1.50699 * 109.47269 * 299.72532 * 7 6 5 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 7 6 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 7 6 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 7 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 7 16 16 H 1.48500 * 109.47256 * 90.00491 * 15 13 11 17 17 H 1.48506 * 109.46930 * 210.00332 * 15 13 11 18 18 H 1.48499 * 109.47104 * 330.00193 * 15 13 11 19 19 C 1.38217 * 119.99571 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.46664 * 270.01916 * 1 2 3 21 21 H 1.08998 * 109.46739 * 30.01341 * 1 2 3 22 22 H 1.08996 * 109.47636 * 150.01662 * 1 2 3 23 23 H 1.08000 * 119.99539 * 0.02562 * 3 2 1 24 24 H 1.08004 * 119.99799 * 180.02562 * 4 3 2 25 25 H 1.08004 * 119.99654 * 180.27379 * 5 4 3 26 26 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 27 27 H 1.07993 * 120.00370 * 359.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0064 6 6 3.5805 -1.1971 0.0010 7 6 4.3340 -2.5022 0.0019 8 1 3.6256 -3.3307 0.0020 9 6 5.1798 -2.5796 1.2042 10 7 5.8327 -2.6394 2.1315 11 6 5.2009 -2.5827 -1.2282 12 1 5.2060 -1.7699 -1.9393 13 6 5.9882 -3.6936 -1.4452 14 7 5.9823 -4.6832 -0.5790 15 14 7.0632 -3.7930 -2.9696 16 1 8.3975 -3.2126 -2.6731 17 1 7.2199 -5.2137 -3.3730 18 1 6.4268 -3.0320 -4.0746 19 6 2.1980 -1.1970 0.0005 20 1 -0.3632 0.0003 1.0277 21 1 -0.3633 0.8899 -0.5140 22 1 -0.3634 -0.8901 -0.5135 23 1 1.6583 2.1326 0.0004 24 1 4.1205 2.1325 0.0010 25 1 5.3517 -0.0002 0.0113 26 1 6.5359 -5.4649 -0.7319 27 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041168309.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:38 Heat of formation + Delta-G solvation = 14.782490 kcal Electronic energy + Delta-G solvation = -11872.522396 eV Core-core repulsion = 9786.833791 eV Total energy + Delta-G solvation = -2085.688605 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.30367 -37.45582 -35.23739 -33.76506 -32.66606 -29.44872 -27.49742 -25.80247 -22.88619 -21.71236 -19.34102 -17.50241 -17.20232 -16.60548 -16.02834 -15.43935 -14.77708 -14.41534 -14.32735 -13.80094 -13.69541 -13.43864 -13.02222 -12.89242 -12.83145 -12.61244 -12.50654 -12.19666 -11.81358 -11.41247 -11.29183 -10.71429 -9.55341 -9.32151 -8.28906 -6.45918 0.61509 0.64868 1.42878 1.44853 1.55834 2.24940 2.32191 2.44691 2.95048 3.11901 3.88886 4.13811 4.18765 4.33430 4.44409 4.66745 4.75511 4.97495 4.98055 5.02823 5.20423 5.31946 5.47335 5.62388 5.72276 5.82688 5.87392 6.05228 6.30889 6.61381 7.16898 7.27407 8.78017 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.037872 B = 0.009871 C = 0.009281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.151073 B = 2836.033762 C = 3016.193769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.120 4.120 5 C -0.133 4.133 6 C -0.063 4.063 7 C 0.160 3.840 8 H 0.067 0.933 9 C 0.274 3.726 10 N -0.549 5.549 11 C -0.523 4.523 12 H 0.079 0.921 13 C 0.016 3.984 14 N -0.914 5.914 15 Si 0.966 3.034 16 H -0.282 1.282 17 H -0.281 1.281 18 H -0.254 1.254 19 C -0.129 4.129 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.150 0.850 24 H 0.141 0.859 25 H 0.101 0.899 26 H 0.268 0.732 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 9.758 -3.003 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.064 4.064 7 C 0.138 3.862 8 H 0.085 0.915 9 C -0.040 4.040 10 N -0.228 5.228 11 C -0.562 4.562 12 H 0.097 0.903 13 C -0.185 4.185 14 N -0.551 5.551 15 Si 0.791 3.209 16 H -0.208 1.208 17 H -0.207 1.207 18 H -0.178 1.178 19 C -0.148 4.148 20 H 0.096 0.904 21 H 0.101 0.899 22 H 0.089 0.911 23 H 0.167 0.833 24 H 0.158 0.842 25 H 0.119 0.881 26 H 0.077 0.923 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.016 9.478 -1.569 13.175 hybrid contribution 0.945 -0.723 -0.854 1.464 sum -8.071 8.755 -2.423 12.152 Atomic orbital electron populations 1.20803 0.88869 1.03704 1.03027 1.20235 0.97637 0.92437 0.98856 1.21296 0.93773 0.98381 1.01492 1.21339 0.95122 0.97467 0.99843 1.21055 0.99587 0.92895 1.01602 1.19819 0.94204 0.93980 0.98410 1.15691 0.91541 0.93363 0.85572 0.91502 1.30530 0.92273 0.88911 0.92330 1.80789 1.13400 1.12931 1.15660 1.21218 1.25607 1.04270 1.05062 0.90327 1.25934 0.97883 0.94951 0.99747 1.70036 1.40011 1.07918 1.37103 0.85402 0.78491 0.77600 0.79418 1.20800 1.20662 1.17779 1.21120 0.92643 0.99001 1.01987 0.90389 0.89914 0.91137 0.83274 0.84169 0.88064 0.92344 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 10.01 71.24 0.71 -1.33 15 2 C -0.09 -2.51 5.88 -19.87 -0.12 -2.63 15 3 C -0.13 -3.42 9.70 22.27 0.22 -3.20 15 4 C -0.12 -3.58 10.05 22.27 0.22 -3.36 15 5 C -0.13 -5.07 8.81 22.27 0.20 -4.88 15 6 C -0.06 -2.55 4.71 -19.87 -0.09 -2.65 15 7 C 0.16 7.74 2.36 -14.09 -0.03 7.71 15 8 H 0.07 3.31 7.88 -2.39 -0.02 3.30 15 9 C 0.27 14.56 12.97 89.45 1.16 15.72 15 10 N -0.55 -30.47 18.54 20.00 0.37 -30.10 15 11 C -0.52 -26.94 8.22 25.60 0.21 -26.73 15 12 H 0.08 3.91 7.61 -2.91 -0.02 3.89 15 13 C 0.02 0.86 5.30 84.65 0.45 1.31 15 14 N -0.91 -51.97 12.37 21.45 0.27 -51.70 15 15 Si 0.97 41.91 29.54 68.60 2.03 43.93 15 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15 17 H -0.28 -11.99 7.11 99.48 0.71 -11.29 15 18 H -0.25 -10.33 7.11 99.48 0.71 -9.63 15 19 C -0.13 -4.40 9.33 22.27 0.21 -4.19 15 20 H 0.08 1.32 8.14 -2.39 -0.02 1.30 15 21 H 0.08 1.24 8.09 -2.39 -0.02 1.22 15 22 H 0.07 1.28 8.09 -2.39 -0.02 1.26 15 23 H 0.15 2.76 8.06 -2.91 -0.02 2.74 15 24 H 0.14 3.35 8.06 -2.91 -0.02 3.33 15 25 H 0.10 4.14 8.04 -2.91 -0.02 4.12 15 26 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 27 H 0.13 4.00 7.95 -2.91 -0.02 3.98 15 Total: -1.00 -62.62 249.32 6.95 -55.66 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.16 Total: 6.42 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 3.13 Total: -24.21 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: 0.64 Total: -81.81 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Total: -62.62 6.95 -55.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041168309.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.447 kcal (2) G-P(sol) polarization free energy of solvation -62.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds