Wall clock time and date at job start Mon Mar 30 2020 01:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46941 * 70.46914 * 3 2 1 5 5 C 1.50703 * 109.46681 * 179.97438 * 4 3 2 6 6 C 1.37633 * 120.13437 * 264.99955 * 5 4 3 7 7 C 1.38614 * 120.25553 * 179.97438 * 6 5 4 8 8 C 1.38662 * 120.49674 * 0.02562 * 7 6 5 9 9 C 1.37598 * 120.24890 * 0.02562 * 8 7 6 10 10 C 1.40707 * 120.12436 * 84.73175 * 5 4 3 11 11 C 1.41396 * 120.24362 * 359.97438 * 10 5 4 12 12 H 1.07995 * 119.99865 * 333.99815 * 11 10 5 13 13 C 1.39952 * 119.99816 * 153.99552 * 11 10 5 14 14 N 1.30817 * 119.99956 * 343.63521 * 13 11 10 15 15 Si 1.86797 * 119.99651 * 163.63615 * 13 11 10 16 16 H 1.48494 * 109.47474 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46963 * 120.00040 * 15 13 11 18 18 H 1.48500 * 109.46769 * 239.99693 * 15 13 11 19 19 H 1.09001 * 109.46794 * 310.47309 * 3 2 1 20 20 H 1.08996 * 109.47121 * 190.47310 * 3 2 1 21 21 H 1.09001 * 109.47054 * 60.00554 * 4 3 2 22 22 H 1.08997 * 109.47330 * 299.99631 * 4 3 2 23 23 H 1.08007 * 119.87409 * 0.02562 * 6 5 4 24 24 H 1.07994 * 119.75177 * 180.02562 * 7 6 5 25 25 H 1.07998 * 119.87434 * 180.02562 * 8 7 6 26 26 H 1.07999 * 120.12585 * 179.97438 * 9 8 7 27 27 H 0.97000 * 120.00500 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.4814 -1.3595 5 6 4.6252 -0.4801 -1.3596 6 6 5.3151 0.6033 -1.8541 7 6 6.7013 0.6074 -1.8549 8 6 7.4085 -0.4775 -1.3594 9 6 6.7396 -1.5718 -0.8611 10 6 5.3323 -1.5842 -0.8491 11 6 4.6343 -2.7002 -0.3328 12 1 3.6367 -2.5775 0.0623 13 6 5.2360 -3.9637 -0.3340 14 7 6.2851 -4.1878 -1.0827 15 14 4.5412 -5.3300 0.7335 16 1 3.3610 -4.8240 1.4792 17 1 4.1318 -6.4699 -0.1258 18 1 5.5783 -5.7827 1.6952 19 1 2.9716 -0.6662 0.7818 20 1 2.9708 1.0113 0.1868 21 1 2.7546 0.1855 -2.1413 22 1 2.7553 -1.4921 -1.5462 23 1 4.7745 1.4540 -2.2422 24 1 7.2344 1.4620 -2.2445 25 1 8.4884 -0.4635 -1.3646 26 1 7.2924 -2.4159 -0.4760 27 1 6.7025 -5.0634 -1.0833 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368110.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:36 Heat of formation + Delta-G solvation = 12.379513 kcal Electronic energy + Delta-G solvation = -11939.989443 eV Core-core repulsion = 9854.196637 eV Total energy + Delta-G solvation = -2085.792806 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61230 -37.68913 -35.42516 -34.59832 -31.31375 -30.36539 -27.17834 -25.07137 -22.72841 -21.14567 -18.99303 -18.25467 -17.19263 -16.21276 -16.09158 -15.41553 -14.93121 -14.66164 -14.30248 -14.01134 -13.38395 -13.21677 -13.09084 -12.90357 -12.75744 -12.57034 -12.13648 -12.00779 -11.71502 -11.15503 -11.03958 -10.95273 -9.15450 -9.08202 -8.53367 -6.21578 1.05270 1.21553 1.43988 1.55517 1.58007 1.86588 1.87970 2.25242 2.85505 3.20377 3.83654 4.36804 4.54969 4.58594 4.63225 4.83620 4.88531 5.01836 5.25296 5.26009 5.43017 5.50190 5.64898 5.87642 6.15050 6.27643 6.32711 6.51408 6.65897 6.83862 7.07100 7.19302 8.42907 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.015188 C = 0.009092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.738947 B = 1843.085334 C = 3078.799986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.244 3.756 3 C -0.016 4.016 4 C -0.042 4.042 5 C -0.197 4.197 6 C -0.089 4.089 7 C -0.240 4.240 8 C -0.118 4.118 9 C -0.191 4.191 10 C 0.088 3.912 11 C -0.483 4.483 12 H 0.089 0.911 13 C 0.036 3.964 14 N -0.831 5.831 15 Si 0.966 3.034 16 H -0.254 1.254 17 H -0.275 1.275 18 H -0.270 1.270 19 H 0.112 0.888 20 H 0.132 0.868 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.124 0.876 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 3.974 1.829 4.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.072 4.072 3 C -0.055 4.055 4 C -0.080 4.080 5 C -0.198 4.198 6 C -0.107 4.107 7 C -0.259 4.259 8 C -0.137 4.137 9 C -0.211 4.211 10 C 0.085 3.915 11 C -0.513 4.513 12 H 0.107 0.893 13 C -0.178 4.178 14 N -0.458 5.458 15 Si 0.788 3.212 16 H -0.178 1.178 17 H -0.200 1.200 18 H -0.195 1.195 19 H 0.130 0.870 20 H 0.149 0.851 21 H 0.093 0.907 22 H 0.076 0.924 23 H 0.142 0.858 24 H 0.131 0.869 25 H 0.118 0.882 26 H 0.112 0.888 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.455 3.790 1.764 4.848 hybrid contribution 0.645 -1.008 0.262 1.225 sum -1.810 2.782 2.026 3.888 Atomic orbital electron populations 1.81158 1.14524 1.11578 1.10995 1.29773 0.95572 0.90831 0.91043 1.19494 0.78910 1.06272 1.00872 1.20013 0.91735 1.01262 0.95023 1.19784 0.94388 0.97118 1.08554 1.20807 0.93898 0.97208 0.98828 1.20757 0.94611 0.99499 1.11063 1.20951 0.98371 0.94600 0.99760 1.21315 0.95349 0.97987 1.06426 1.17788 0.91924 0.92414 0.89324 1.19870 1.02473 0.92187 1.36739 0.89272 1.26638 0.94398 1.02256 0.94544 1.69896 1.19784 1.24493 1.31580 0.85385 0.79410 0.77594 0.78775 1.17780 1.20027 1.19495 0.87045 0.85057 0.90687 0.92442 0.85787 0.86947 0.88230 0.88768 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.49 18.54 20.01 0.37 -17.12 15 2 C 0.24 7.29 15.43 89.44 1.38 8.67 15 3 C -0.02 -0.42 5.57 28.79 0.16 -0.26 15 4 C -0.04 -1.37 4.64 29.85 0.14 -1.23 15 5 C -0.20 -7.97 5.19 -19.40 -0.10 -8.07 15 6 C -0.09 -3.35 9.66 22.22 0.21 -3.13 15 7 C -0.24 -9.45 10.05 22.46 0.23 -9.23 15 8 C -0.12 -5.20 10.02 22.22 0.22 -4.98 15 9 C -0.19 -9.48 8.69 22.73 0.20 -9.28 15 10 C 0.09 4.21 5.56 -21.29 -0.12 4.09 15 11 C -0.48 -23.19 8.10 23.46 0.19 -23.00 15 12 H 0.09 3.97 6.07 -2.91 -0.02 3.96 15 13 C 0.04 1.71 5.16 85.26 0.44 2.15 15 14 N -0.83 -42.16 10.95 21.83 0.24 -41.92 15 15 Si 0.97 36.87 29.59 68.60 2.03 38.90 15 16 H -0.25 -9.37 7.11 99.48 0.71 -8.66 15 17 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 18 H -0.27 -10.09 7.11 99.48 0.71 -9.38 15 19 H 0.11 3.15 7.26 -2.39 -0.02 3.13 15 20 H 0.13 2.85 8.14 -2.39 -0.02 2.83 15 21 H 0.07 2.16 8.05 -2.39 -0.02 2.14 15 22 H 0.06 2.11 7.08 -2.39 -0.02 2.09 15 23 H 0.12 3.75 8.06 -2.91 -0.02 3.73 15 24 H 0.11 3.78 8.06 -2.91 -0.02 3.76 15 25 H 0.10 3.95 8.06 -2.91 -0.02 3.93 15 26 H 0.09 5.01 6.20 -2.91 -0.02 4.99 15 27 H 0.28 13.18 8.30 -92.71 -0.77 12.41 15 Total: -1.00 -55.95 243.75 6.76 -49.18 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.17 Total: 15.23 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 2.95 Total: -44.27 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.61 Total: -59.04 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -55.95 6.76 -49.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368110.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.562 kcal (2) G-P(sol) polarization free energy of solvation -55.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds