Wall clock time and date at job start Mon Mar 30 2020 01:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47189 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47245 * 185.50002 * 3 2 1 5 5 C 1.50697 * 109.47686 * 180.02562 * 4 3 2 6 6 C 1.38640 * 119.74952 * 270.30321 * 5 4 3 7 7 C 1.37613 * 120.24543 * 180.30058 * 6 5 4 8 8 C 1.40709 * 119.74954 * 359.42165 * 7 6 5 9 9 C 1.41391 * 120.24881 * 180.29949 * 8 7 6 10 10 H 1.08006 * 120.00159 * 24.38124 * 9 8 7 11 11 C 1.39949 * 120.00394 * 204.37955 * 9 8 7 12 12 N 1.30826 * 119.99793 * 17.83971 * 11 9 8 13 13 Si 1.86793 * 120.00334 * 197.84214 * 11 9 8 14 14 H 1.48504 * 109.47163 * 59.99946 * 13 11 9 15 15 H 1.48493 * 109.47398 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47268 * 300.00028 * 13 11 9 17 17 C 1.40717 * 119.50871 * 0.27696 * 8 7 6 18 18 C 1.37615 * 119.74803 * 359.97438 * 17 8 7 19 19 H 1.09003 * 109.47600 * 65.50507 * 3 2 1 20 20 H 1.09001 * 109.47625 * 305.49958 * 3 2 1 21 21 H 1.09008 * 109.46866 * 59.99720 * 4 3 2 22 22 H 1.09004 * 109.47259 * 300.00586 * 4 3 2 23 23 H 1.07998 * 119.87277 * 359.97438 * 6 5 4 24 24 H 1.08008 * 120.12380 * 179.69269 * 7 6 5 25 25 H 0.97001 * 120.00110 * 179.97438 * 12 11 9 26 26 H 1.08004 * 120.12753 * 180.02562 * 17 8 7 27 27 H 1.08003 * 119.88271 * 180.02562 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4367 0.1383 5 6 4.6243 1.4376 0.1376 6 6 5.3128 1.3161 1.3348 7 6 6.6889 1.3219 1.3468 8 6 7.3971 1.4394 0.1366 9 6 8.8110 1.4402 0.1360 10 1 9.3517 0.9740 0.9465 11 6 9.5101 2.0449 -0.9148 12 7 8.9024 2.8969 -1.6999 13 14 11.3107 1.6356 -1.1965 14 1 11.4522 0.1813 -1.4616 15 1 11.8160 2.4024 -2.3634 16 1 12.0954 1.9972 0.0113 17 6 6.6878 1.5558 -1.0731 18 6 5.3117 1.5530 -1.0608 19 1 2.9716 -0.4253 -0.9352 20 1 2.9717 -0.5959 0.8366 21 1 2.7538 1.8628 1.0734 22 1 2.7537 2.0334 -0.6983 23 1 4.7671 1.2219 2.2620 24 1 7.2233 1.2321 2.2811 25 1 9.3870 3.3164 -2.4280 26 1 7.2213 1.6462 -2.0078 27 1 4.7651 1.6417 -1.9880 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368120.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:39 Heat of formation + Delta-G solvation = 23.123478 kcal Electronic energy + Delta-G solvation = -11559.116070 eV Core-core repulsion = 9473.789158 eV Total energy + Delta-G solvation = -2085.326913 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -37.90544 -36.53914 -34.29220 -32.57595 -29.49466 -29.14657 -25.90763 -23.02777 -21.04359 -19.82810 -17.33955 -17.21980 -15.40553 -14.90234 -14.48185 -13.86025 -13.45080 -13.41040 -12.78299 -12.35198 -12.11043 -11.97494 -11.77104 -11.43788 -11.14001 -10.95201 -10.68381 -10.51365 -10.34031 -9.64752 -9.42048 -9.15585 -7.51182 -7.35305 -6.80784 -4.39545 2.67212 2.94382 2.95143 3.02031 3.04315 3.06526 3.19249 3.89424 4.25966 4.56024 5.37449 5.48298 5.73445 5.77708 6.08627 6.11110 6.33366 6.38011 6.45045 6.91448 7.03357 7.23945 7.32284 7.56346 7.72169 7.82027 8.00843 8.06222 8.25550 8.59513 8.85046 8.92900 10.13542 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.084453 B = 0.006585 C = 0.006362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.467538 B = 4250.828927 C = 4399.867471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.216 3.784 3 C -0.026 4.026 4 C -0.047 4.047 5 C -0.220 4.220 6 C -0.084 4.084 7 C -0.227 4.227 8 C 0.111 3.889 9 C -0.463 4.463 10 H 0.077 0.923 11 C 0.076 3.924 12 N -0.792 5.792 13 Si 0.908 3.092 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.265 1.265 17 C -0.166 4.166 18 C -0.094 4.094 19 H 0.107 0.893 20 H 0.107 0.893 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.281 0.719 26 H 0.117 0.883 27 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -2.815 0.512 3.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.101 4.101 3 C -0.067 4.067 4 C -0.085 4.085 5 C -0.222 4.222 6 C -0.102 4.102 7 C -0.246 4.246 8 C 0.109 3.891 9 C -0.492 4.492 10 H 0.095 0.905 11 C -0.142 4.142 12 N -0.417 5.417 13 Si 0.732 3.268 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.190 1.190 17 C -0.185 4.185 18 C -0.112 4.112 19 H 0.125 0.875 20 H 0.125 0.875 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.109 0.891 25 H 0.092 0.908 26 H 0.135 0.865 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.655 -2.650 0.308 4.525 hybrid contribution 1.348 -0.042 -0.179 1.360 sum -2.307 -2.692 0.128 3.548 Atomic orbital electron populations 1.81161 1.13412 1.09607 1.09960 1.29723 0.95703 0.92347 0.92285 1.19585 0.79923 1.01470 1.05673 1.20129 0.94300 0.92447 1.01661 1.18851 0.91965 1.17429 0.93910 1.20388 0.94173 1.00213 0.95413 1.20968 0.93243 1.13559 0.96861 1.17633 0.93223 0.87494 0.90787 1.19589 0.91597 1.32060 1.05971 0.90471 1.25918 1.00874 0.92747 0.94667 1.69815 1.38764 1.18798 1.14300 0.86373 0.81945 0.79810 0.78647 1.18791 1.20349 1.19008 1.21319 0.92352 1.06188 0.98653 1.20555 0.94641 1.00709 0.95341 0.87479 0.87533 0.92118 0.92030 0.89388 0.89074 0.90765 0.86486 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.52 18.54 42.16 0.78 -6.73 15 2 C 0.22 2.98 15.43 -20.76 -0.32 2.66 15 3 C -0.03 -0.32 5.68 -29.52 -0.17 -0.49 15 4 C -0.05 -0.69 5.29 -27.88 -0.15 -0.83 15 5 C -0.22 -4.21 5.16 -104.33 -0.54 -4.75 15 6 C -0.08 -1.69 9.67 -39.66 -0.38 -2.07 15 7 C -0.23 -5.23 9.80 -38.88 -0.38 -5.61 15 8 C 0.11 2.82 5.57 -106.83 -0.60 2.22 15 9 C -0.46 -11.84 9.05 -37.74 -0.34 -12.18 15 10 H 0.08 1.90 7.91 -52.48 -0.41 1.48 15 11 C 0.08 1.85 5.14 -17.34 -0.09 1.76 15 12 N -0.79 -19.83 10.95 55.55 0.61 -19.22 15 13 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 15 14 H -0.26 -5.20 7.11 56.52 0.40 -4.79 15 15 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 17 C -0.17 -4.05 8.70 -38.87 -0.34 -4.39 15 18 C -0.09 -1.99 9.67 -39.66 -0.38 -2.37 15 19 H 0.11 1.20 8.14 -51.93 -0.42 0.78 15 20 H 0.11 1.17 8.14 -51.93 -0.42 0.75 15 21 H 0.06 0.85 8.08 -51.92 -0.42 0.43 15 22 H 0.06 0.88 8.08 -51.93 -0.42 0.46 15 23 H 0.09 1.54 8.06 -52.49 -0.42 1.11 15 24 H 0.09 2.00 8.06 -52.48 -0.42 1.58 15 25 H 0.28 6.43 8.30 -40.82 -0.34 6.09 15 26 H 0.12 2.98 6.16 -52.48 -0.32 2.66 15 27 H 0.09 1.66 8.06 -52.48 -0.42 1.23 15 LS Contribution 248.55 15.07 3.75 3.75 Total: -1.00 -26.87 248.55 -6.41 -33.28 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -2.83 Total: 1.95 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: -3.69 Total: -26.05 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 1.39 Total: -25.95 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -26.87 -6.41 -33.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368120.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.403 kcal (2) G-P(sol) polarization free energy of solvation -26.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds