Wall clock time and date at job start Mon Mar 30 2020 01:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38650 * 119.88042 * 2 1 4 4 C 1.38608 * 120.50801 * 180.02562 * 3 2 1 5 5 C 1.37641 * 120.24162 * 359.73874 * 4 3 2 6 6 C 1.50703 * 120.12634 * 180.25858 * 5 4 3 7 7 C 1.47195 * 109.47292 * 265.25487 * 6 5 4 8 8 N 5.71788 * 154.72604 * 266.67672 * 2 1 3 9 9 C 1.40695 * 119.74793 * 0.51557 * 5 4 3 10 10 C 1.41392 * 120.24547 * 179.77011 * 9 5 4 11 11 H 1.07996 * 119.99909 * 333.49292 * 10 9 5 12 12 C 1.39945 * 120.00278 * 153.77520 * 10 9 5 13 13 N 1.30833 * 119.99683 * 343.65279 * 12 10 9 14 14 Si 1.86797 * 120.00372 * 163.65665 * 12 10 9 15 15 H 1.48494 * 109.47300 * 89.99721 * 14 12 10 16 16 H 1.48499 * 109.47114 * 210.00060 * 14 12 10 17 17 H 1.48500 * 109.47173 * 329.99775 * 14 12 10 18 18 C 1.37604 * 119.87295 * 180.02562 * 2 1 3 19 19 H 1.08996 * 109.47184 * 269.98109 * 1 2 3 20 20 H 1.09000 * 109.47030 * 29.97724 * 1 2 3 21 21 H 1.08998 * 109.47460 * 149.97536 * 1 2 3 22 22 H 1.08003 * 119.74857 * 0.04079 * 3 2 1 23 23 H 1.07999 * 119.88194 * 180.02562 * 4 3 2 24 24 H 1.09002 * 109.47490 * 25.25784 * 6 5 4 25 25 H 1.08999 * 109.47329 * 145.25305 * 6 5 4 26 26 H 0.96997 * 119.99759 * 180.02562 * 13 12 10 27 27 H 1.07995 * 120.12768 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.2022 0.0000 4 6 3.5838 1.2174 -0.0005 5 6 4.2900 0.0359 0.0044 6 6 5.7969 0.0555 0.0096 7 6 6.2939 -0.0557 -1.3714 8 7 6.6776 -0.1415 -2.4371 9 6 3.5997 -1.1900 -0.0011 10 6 4.3146 -2.4099 -0.0011 11 1 5.3113 -2.4516 -0.4147 12 6 3.7284 -3.5645 0.5296 13 7 2.6771 -3.4684 1.3024 14 14 4.4470 -5.2430 0.1348 15 1 5.4702 -5.5951 1.1516 16 1 3.3651 -6.2602 0.1482 17 1 5.0767 -5.2080 -1.2096 18 6 2.1924 -1.1932 -0.0005 19 1 -0.3633 -0.0003 1.0276 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3634 -0.8897 -0.5142 22 1 1.6517 2.1340 0.0007 23 1 4.1115 2.1596 -0.0001 24 1 6.1466 0.9904 0.4475 25 1 6.1691 -0.7829 0.5984 26 1 2.2710 -4.2687 1.6705 27 1 1.6524 -2.1285 -0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368806.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:49 Heat of formation + Delta-G solvation = 23.951524 kcal Electronic energy + Delta-G solvation = -12032.881253 eV Core-core repulsion = 9947.590247 eV Total energy + Delta-G solvation = -2085.291006 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.10368 -35.77730 -33.87170 -32.63589 -29.61806 -28.78010 -25.60875 -24.20022 -21.16618 -19.51230 -17.14933 -16.59384 -15.30726 -14.61690 -14.37350 -13.72253 -12.99648 -12.77717 -12.68180 -12.57120 -12.09509 -11.61362 -11.50394 -11.28648 -11.13198 -10.92264 -10.65671 -10.61299 -10.32002 -9.57222 -9.45158 -9.21879 -7.44296 -7.29773 -6.82686 -4.46848 2.65696 2.84700 3.04103 3.08828 3.18875 3.54493 3.59795 3.88361 4.52362 4.96104 5.58884 5.92472 6.00815 6.05639 6.17670 6.34500 6.37439 6.42084 6.62719 6.67073 7.00245 7.20731 7.32312 7.52609 7.78717 7.93394 8.04090 8.19896 8.33993 8.53022 8.79337 8.88100 10.10301 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.015976 C = 0.010041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.733155 B = 1752.156550 C = 2787.871622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.075 4.075 3 C -0.237 4.237 4 C -0.075 4.075 5 C -0.214 4.214 6 C 0.036 3.964 7 C 0.231 3.769 8 N -0.478 5.478 9 C 0.125 3.875 10 C -0.460 4.460 11 H 0.078 0.922 12 C 0.079 3.921 13 N -0.789 5.789 14 Si 0.903 3.097 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.261 1.261 18 C -0.156 4.156 19 H 0.055 0.945 20 H 0.048 0.952 21 H 0.053 0.947 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.281 0.719 27 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 2.011 1.939 2.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.076 4.076 3 C -0.256 4.256 4 C -0.094 4.094 5 C -0.217 4.217 6 C -0.004 4.004 7 C -0.085 4.085 8 N -0.157 5.157 9 C 0.122 3.878 10 C -0.489 4.489 11 H 0.097 0.903 12 C -0.140 4.140 13 N -0.413 5.413 14 Si 0.727 3.273 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.175 4.175 19 H 0.074 0.926 20 H 0.067 0.933 21 H 0.072 0.928 22 H 0.106 0.894 23 H 0.109 0.891 24 H 0.111 0.889 25 H 0.129 0.871 26 H 0.092 0.908 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.078 1.730 0.492 1.800 hybrid contribution 0.010 -0.800 0.349 0.873 sum 0.088 0.930 0.840 1.256 Atomic orbital electron populations 1.20654 0.93832 1.00695 1.00744 1.19569 0.94041 0.93939 1.00036 1.20218 0.93619 0.95695 1.16115 1.20381 0.93906 0.95664 0.99419 1.19183 0.91106 0.93754 1.17689 1.17916 0.94487 1.03845 0.84139 1.29705 0.91463 0.91740 0.95572 1.81041 1.11478 1.10455 1.12687 1.17398 0.91858 0.91335 0.87166 1.19553 1.01958 0.92614 1.34818 0.90346 1.25886 0.94177 1.01297 0.92599 1.69812 1.18215 1.31584 1.21725 0.86388 0.79581 0.81024 0.80324 1.19304 1.20021 1.18476 1.21206 0.94198 0.96106 1.05962 0.92593 0.93286 0.92844 0.89370 0.89071 0.88913 0.87139 0.90764 0.86303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.88 10.00 36.01 0.36 -1.52 15 2 C -0.08 -1.68 5.87 -104.70 -0.61 -2.30 15 3 C -0.24 -5.05 9.70 -39.29 -0.38 -5.43 15 4 C -0.08 -1.57 9.66 -39.66 -0.38 -1.95 15 5 C -0.21 -4.70 5.15 -103.91 -0.53 -5.23 15 6 C 0.04 0.65 5.20 -30.67 -0.16 0.49 15 7 C 0.23 4.62 15.01 -20.76 -0.31 4.31 15 8 N -0.48 -10.42 18.54 42.15 0.78 -9.64 15 9 C 0.12 3.10 5.56 -106.83 -0.59 2.50 15 10 C -0.46 -11.39 8.13 -37.74 -0.31 -11.70 15 11 H 0.08 1.89 6.67 -52.49 -0.35 1.54 15 12 C 0.08 1.89 5.16 -17.34 -0.09 1.80 15 13 N -0.79 -19.32 10.97 55.55 0.61 -18.71 15 14 Si 0.90 18.18 29.59 -169.99 -5.03 13.15 15 15 H -0.27 -5.28 7.11 56.52 0.40 -4.87 15 16 H -0.28 -5.43 7.11 56.52 0.40 -5.03 15 17 H -0.26 -5.38 7.11 56.52 0.40 -4.98 15 18 C -0.16 -3.85 8.32 -38.87 -0.32 -4.17 15 19 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 20 H 0.05 0.79 8.08 -51.93 -0.42 0.37 15 21 H 0.05 0.94 8.08 -51.93 -0.42 0.52 15 22 H 0.09 1.68 8.06 -52.48 -0.42 1.25 15 23 H 0.09 1.63 8.06 -52.49 -0.42 1.20 15 24 H 0.09 1.33 8.05 -51.93 -0.42 0.92 15 25 H 0.11 1.93 7.07 -51.93 -0.37 1.57 15 26 H 0.28 6.30 8.30 -40.82 -0.34 5.97 15 27 H 0.12 3.06 6.22 -52.49 -0.33 2.73 15 LS Contribution 244.91 15.07 3.69 3.69 Total: -1.00 -27.01 244.91 -5.99 -33.00 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.70 Total: 1.72 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -3.34 Total: -23.21 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: 1.39 Total: -28.35 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.01 -5.99 -33.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368806.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.949 kcal (2) G-P(sol) polarization free energy of solvation -27.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds