Wall clock time and date at job start Mon Mar 30 2020 01:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38650 * 119.88042 * 2 1 4 4 C 1.38608 * 120.50801 * 180.02562 * 3 2 1 5 5 C 1.37641 * 120.24162 * 359.73874 * 4 3 2 6 6 C 1.50703 * 120.12634 * 180.25858 * 5 4 3 7 7 C 1.47195 * 109.47292 * 265.25487 * 6 5 4 8 8 N 5.71788 * 154.72604 * 266.67672 * 2 1 3 9 9 C 1.40695 * 119.74793 * 0.51557 * 5 4 3 10 10 C 1.41392 * 120.24547 * 179.77011 * 9 5 4 11 11 H 1.07996 * 119.99909 * 333.49292 * 10 9 5 12 12 C 1.39945 * 120.00278 * 153.77520 * 10 9 5 13 13 N 1.30833 * 119.99683 * 343.65279 * 12 10 9 14 14 Si 1.86797 * 120.00372 * 163.65665 * 12 10 9 15 15 H 1.48494 * 109.47300 * 89.99721 * 14 12 10 16 16 H 1.48499 * 109.47114 * 210.00060 * 14 12 10 17 17 H 1.48500 * 109.47173 * 329.99775 * 14 12 10 18 18 C 1.37604 * 119.87295 * 180.02562 * 2 1 3 19 19 H 1.08996 * 109.47184 * 269.98109 * 1 2 3 20 20 H 1.09000 * 109.47030 * 29.97724 * 1 2 3 21 21 H 1.08998 * 109.47460 * 149.97536 * 1 2 3 22 22 H 1.08003 * 119.74857 * 0.04079 * 3 2 1 23 23 H 1.07999 * 119.88194 * 180.02562 * 4 3 2 24 24 H 1.09002 * 109.47490 * 25.25784 * 6 5 4 25 25 H 1.08999 * 109.47329 * 145.25305 * 6 5 4 26 26 H 0.96997 * 119.99759 * 180.02562 * 13 12 10 27 27 H 1.07995 * 120.12768 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.2022 0.0000 4 6 3.5838 1.2174 -0.0005 5 6 4.2900 0.0359 0.0044 6 6 5.7969 0.0555 0.0096 7 6 6.2939 -0.0557 -1.3714 8 7 6.6776 -0.1415 -2.4371 9 6 3.5997 -1.1900 -0.0011 10 6 4.3146 -2.4099 -0.0011 11 1 5.3113 -2.4516 -0.4147 12 6 3.7284 -3.5645 0.5296 13 7 2.6771 -3.4684 1.3024 14 14 4.4470 -5.2430 0.1348 15 1 5.4702 -5.5951 1.1516 16 1 3.3651 -6.2602 0.1482 17 1 5.0767 -5.2080 -1.2096 18 6 2.1924 -1.1932 -0.0005 19 1 -0.3633 -0.0003 1.0276 20 1 -0.3633 0.8902 -0.5135 21 1 -0.3634 -0.8897 -0.5142 22 1 1.6517 2.1340 0.0007 23 1 4.1115 2.1596 -0.0001 24 1 6.1466 0.9904 0.4475 25 1 6.1691 -0.7829 0.5984 26 1 2.2710 -4.2687 1.6705 27 1 1.6524 -2.1285 -0.0005 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368806.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:49 Heat of formation + Delta-G solvation = 10.712535 kcal Electronic energy + Delta-G solvation = -12033.455338 eV Core-core repulsion = 9947.590247 eV Total energy + Delta-G solvation = -2085.865092 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.78473 -37.40853 -35.61901 -34.26093 -31.35892 -30.30759 -27.37055 -25.79804 -22.90311 -21.19353 -18.89951 -18.19561 -16.99524 -16.23468 -15.99811 -15.37483 -14.60043 -14.36243 -14.31557 -14.18792 -13.68922 -13.26056 -13.13567 -12.89362 -12.75996 -12.57462 -12.24044 -12.15245 -11.96777 -11.24612 -11.13296 -10.97271 -9.21128 -8.99911 -8.57968 -6.30004 0.95998 1.14605 1.39511 1.48609 1.55320 1.97480 2.00267 2.21224 2.77824 3.38865 3.88522 4.42186 4.43466 4.64906 4.66732 4.79421 4.94268 4.98056 5.09912 5.17338 5.24157 5.44072 5.62377 5.81489 6.06855 6.18644 6.30707 6.44414 6.74390 6.79193 6.99241 7.12676 8.36570 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.022292 B = 0.015976 C = 0.010041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.733155 B = 1752.156550 C = 2787.871622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.087 4.087 3 C -0.241 4.241 4 C -0.079 4.079 5 C -0.219 4.219 6 C 0.040 3.960 7 C 0.248 3.752 8 N -0.515 5.515 9 C 0.093 3.907 10 C -0.488 4.488 11 H 0.076 0.924 12 C 0.042 3.958 13 N -0.819 5.819 14 Si 0.964 3.036 15 H -0.257 1.257 16 H -0.269 1.269 17 H -0.270 1.270 18 C -0.190 4.190 19 H 0.065 0.935 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.116 0.884 23 H 0.129 0.871 24 H 0.140 0.860 25 H 0.115 0.885 26 H 0.286 0.714 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.023 3.195 2.281 3.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 C -0.261 4.261 4 C -0.097 4.097 5 C -0.222 4.222 6 C 0.001 3.999 7 C -0.068 4.068 8 N -0.194 5.194 9 C 0.091 3.909 10 C -0.517 4.517 11 H 0.094 0.906 12 C -0.173 4.173 13 N -0.445 5.445 14 Si 0.786 3.214 15 H -0.182 1.182 16 H -0.194 1.194 17 H -0.195 1.195 18 C -0.210 4.210 19 H 0.084 0.916 20 H 0.092 0.908 21 H 0.070 0.930 22 H 0.134 0.866 23 H 0.146 0.854 24 H 0.157 0.843 25 H 0.133 0.867 26 H 0.097 0.903 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.396 2.923 0.840 3.067 hybrid contribution -0.142 -1.031 0.249 1.070 sum 0.254 1.892 1.089 2.198 Atomic orbital electron populations 1.20669 0.91382 1.01844 1.01705 1.20015 0.96183 0.93601 0.98882 1.20658 0.94335 0.96300 1.14760 1.20846 0.94105 0.96814 0.97948 1.19562 0.93174 0.93189 1.16296 1.18086 0.92080 1.06503 0.83220 1.30007 0.90582 0.90564 0.95633 1.81055 1.12648 1.11888 1.13762 1.17788 0.92326 0.92727 0.88081 1.19711 1.02234 0.93651 1.36138 0.90601 1.26554 0.94478 1.04131 0.92174 1.69868 1.19378 1.32550 1.22682 0.85460 0.79057 0.77272 0.79565 1.18164 1.19394 1.19487 1.21200 0.94703 0.96314 1.08737 0.91621 0.90809 0.93028 0.86638 0.85356 0.84259 0.86679 0.90330 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.49 10.00 71.24 0.71 -2.78 15 2 C -0.09 -3.78 5.87 -19.92 -0.12 -3.90 15 3 C -0.24 -9.66 9.70 22.46 0.22 -9.44 15 4 C -0.08 -3.06 9.66 22.22 0.21 -2.84 15 5 C -0.22 -9.26 5.15 -19.40 -0.10 -9.36 15 6 C 0.04 1.36 5.20 28.04 0.15 1.50 15 7 C 0.25 9.47 15.01 89.44 1.34 10.82 15 8 N -0.51 -21.91 18.54 20.00 0.37 -21.54 15 9 C 0.09 4.65 5.56 -21.29 -0.12 4.53 15 10 C -0.49 -24.54 8.13 23.46 0.19 -24.35 15 11 H 0.08 3.70 6.67 -2.91 -0.02 3.68 15 12 C 0.04 2.05 5.16 85.26 0.44 2.49 15 13 N -0.82 -41.13 10.97 21.83 0.24 -40.89 15 14 Si 0.96 37.74 29.59 68.60 2.03 39.77 15 15 H -0.26 -9.53 7.11 99.48 0.71 -8.82 15 16 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 18 C -0.19 -9.57 8.32 22.73 0.19 -9.38 15 19 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 20 H 0.07 2.19 8.08 -2.39 -0.02 2.18 15 21 H 0.05 1.80 8.08 -2.39 -0.02 1.78 15 22 H 0.12 3.94 8.06 -2.91 -0.02 3.91 15 23 H 0.13 3.96 8.06 -2.91 -0.02 3.93 15 24 H 0.14 3.38 8.05 -2.39 -0.02 3.37 15 25 H 0.12 3.83 7.07 -2.39 -0.02 3.81 15 26 H 0.29 13.12 8.30 -92.71 -0.77 12.35 15 27 H 0.10 5.17 6.22 -2.91 -0.02 5.16 15 Total: -1.00 -58.42 244.91 6.93 -51.49 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.17 Total: 13.88 kcal Atomic # 6 Polarization: -45.83 SS G_CDS: 3.12 Total: -42.71 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: 0.61 Total: -62.43 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.77 kcal Total: -58.42 6.93 -51.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368806.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.203 kcal (2) G-P(sol) polarization free energy of solvation -58.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds