Wall clock time and date at job start Mon Mar 30 2020 01:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40730 * 120.13099 * 2 1 4 4 C 1.41392 * 120.24357 * 0.02562 * 3 2 1 5 5 H 1.08002 * 120.00042 * 25.63206 * 4 3 2 6 6 C 1.39948 * 120.00033 * 205.62287 * 4 3 2 7 7 N 1.30822 * 120.00266 * 15.29667 * 6 4 3 8 8 Si 1.86807 * 119.99881 * 195.29268 * 6 4 3 9 9 H 1.48496 * 109.47022 * 94.96961 * 8 6 4 10 10 H 1.48497 * 109.46903 * 214.97223 * 8 6 4 11 11 H 1.48502 * 109.47170 * 334.96733 * 8 6 4 12 12 C 1.40701 * 119.51195 * 180.27533 * 3 2 1 13 13 C 1.37642 * 119.74537 * 359.75122 * 12 3 2 14 14 C 1.38610 * 120.24428 * 0.02562 * 13 12 3 15 15 C 1.37604 * 120.12409 * 179.79620 * 2 1 3 16 16 C 1.50694 * 119.87553 * 359.97438 * 15 2 1 17 17 C 1.47205 * 109.47330 * 84.72399 * 16 15 2 18 18 N 4.03787 * 80.11214 * 217.78317 * 2 1 3 19 19 H 1.09001 * 109.46927 * 270.20688 * 1 2 3 20 20 H 1.09003 * 109.47170 * 30.19883 * 1 2 3 21 21 H 1.08996 * 109.47588 * 150.20490 * 1 2 3 22 22 H 0.97000 * 120.00352 * 179.97438 * 7 6 4 23 23 H 1.08005 * 120.12686 * 179.77065 * 12 3 2 24 24 H 1.07996 * 119.87429 * 180.02562 * 13 12 3 25 25 H 1.07999 * 119.74749 * 180.02562 * 14 13 12 26 26 H 1.09002 * 109.47435 * 324.72561 * 16 15 2 27 27 H 1.08997 * 109.47161 * 204.72669 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2134 1.2171 0.0000 4 6 1.5145 2.4462 0.0005 5 1 0.5146 2.4987 0.4056 6 6 2.1183 3.5948 -0.5235 7 7 3.1841 3.4888 -1.2747 8 14 1.4023 5.2794 -0.1505 9 1 2.1077 5.8700 1.0151 10 1 1.5733 6.1626 -1.3321 11 1 -0.0432 5.1449 0.1618 12 6 3.6203 1.2020 -0.0059 13 6 4.2903 -0.0004 -0.0064 14 6 3.5841 -1.1931 -0.0016 15 6 2.1976 -1.1902 0.0042 16 6 1.4441 -2.4952 0.0095 17 6 1.0877 -2.8616 -1.3710 18 7 0.8136 -3.1439 -2.4372 19 1 -0.3633 0.0037 1.0277 20 1 -0.3634 0.8882 -0.5169 21 1 -0.3634 -0.8918 -0.5106 22 1 3.6024 4.2849 -1.6383 23 1 4.1725 2.1302 -0.0097 24 1 5.3701 -0.0145 -0.0105 25 1 4.1179 -2.1319 -0.0017 26 1 0.5360 -2.3882 0.6029 27 1 2.0709 -3.2750 0.4420 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368848.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:51 Heat of formation + Delta-G solvation = 12.562156 kcal Electronic energy + Delta-G solvation = -12023.297454 eV Core-core repulsion = 9937.512568 eV Total energy + Delta-G solvation = -2085.784886 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.92846 -37.51833 -35.65974 -33.65805 -32.65903 -29.09267 -27.42025 -26.52856 -22.42827 -21.31557 -19.10640 -18.04521 -17.19152 -16.34958 -15.99151 -15.50503 -14.64149 -14.60909 -14.31631 -13.85108 -13.59809 -13.20990 -13.07602 -12.92884 -12.82085 -12.59696 -12.30938 -12.12392 -12.00172 -11.24627 -11.08701 -11.00199 -9.18644 -9.05786 -8.56247 -6.27607 0.99574 1.03940 1.39578 1.52055 1.53486 1.89474 1.92603 2.22768 2.75793 3.34165 3.81706 4.25537 4.42660 4.62102 4.69508 4.80490 4.88851 5.04782 5.09121 5.19494 5.36409 5.41918 5.60157 5.82901 6.07241 6.20498 6.24012 6.43497 6.68292 6.78341 7.01538 7.12052 8.39198 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.043238 B = 0.010174 C = 0.009101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.424328 B = 2751.368548 C = 3076.013700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.192 4.192 3 C 0.073 3.927 4 C -0.490 4.490 5 H 0.081 0.919 6 C 0.031 3.969 7 N -0.835 5.835 8 Si 0.978 3.022 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.256 1.256 12 C -0.187 4.187 13 C -0.122 4.122 14 C -0.216 4.216 15 C -0.074 4.074 16 C 0.026 3.974 17 C 0.243 3.757 18 N -0.505 5.505 19 H 0.070 0.930 20 H 0.042 0.958 21 H 0.057 0.943 22 H 0.284 0.716 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.127 0.873 26 H 0.139 0.861 27 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.126 -4.535 5.763 7.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.193 4.193 3 C 0.071 3.929 4 C -0.520 4.520 5 H 0.099 0.901 6 C -0.183 4.183 7 N -0.462 5.462 8 Si 0.799 3.201 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.180 1.180 12 C -0.207 4.207 13 C -0.140 4.140 14 C -0.235 4.235 15 C -0.076 4.076 16 C -0.013 4.013 17 C -0.073 4.073 18 N -0.184 5.184 19 H 0.088 0.912 20 H 0.061 0.939 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.115 0.885 24 H 0.124 0.876 25 H 0.145 0.855 26 H 0.156 0.844 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.394 -4.833 4.017 6.725 hybrid contribution 0.297 1.319 0.134 1.359 sum -2.097 -3.514 4.152 5.829 Atomic orbital electron populations 1.20466 0.91655 1.00757 1.01320 1.20040 0.95873 0.92460 1.10959 1.17857 0.92308 0.93050 0.89674 1.19833 1.02204 0.93430 1.36511 0.90071 1.26740 0.94576 1.04895 0.92068 1.69892 1.19461 1.32631 1.24231 0.85249 0.79798 0.76414 0.78614 1.18828 1.19959 1.17955 1.21396 0.95099 0.96910 1.07292 1.20956 0.98632 0.93261 1.01172 1.20715 0.93347 0.97162 1.12311 1.19102 0.93395 0.92667 1.02419 1.18439 1.03380 0.95888 0.83628 1.29732 0.91207 0.90925 0.95415 1.81162 1.11713 1.11973 1.13506 0.91164 0.93894 0.92385 0.90591 0.88536 0.87591 0.85536 0.84379 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.17 8.60 71.23 0.61 -2.55 15 2 C -0.19 -8.40 5.94 -19.41 -0.12 -8.52 15 3 C 0.07 3.79 5.57 -21.29 -0.12 3.67 15 4 C -0.49 -25.58 8.14 23.46 0.19 -25.39 15 5 H 0.08 4.04 6.87 -2.91 -0.02 4.02 15 6 C 0.03 1.54 5.19 85.26 0.44 1.98 15 7 N -0.84 -44.37 10.87 21.83 0.24 -44.13 15 8 Si 0.98 38.35 29.59 68.60 2.03 40.38 15 9 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 10 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 11 H -0.26 -9.67 7.11 99.48 0.71 -8.96 15 12 C -0.19 -9.68 8.69 22.73 0.20 -9.49 15 13 C -0.12 -5.41 10.02 22.22 0.22 -5.18 15 14 C -0.22 -8.31 9.68 22.46 0.22 -8.09 15 15 C -0.07 -2.76 5.08 -19.92 -0.10 -2.86 15 16 C 0.03 0.65 5.17 28.04 0.15 0.80 15 17 C 0.24 7.76 14.57 89.44 1.30 9.06 15 18 N -0.51 -19.06 18.54 20.01 0.37 -18.69 15 19 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 20 H 0.04 1.75 6.79 -2.39 -0.02 1.74 15 21 H 0.06 1.88 6.11 -2.39 -0.01 1.86 15 22 H 0.28 13.77 8.30 -92.71 -0.77 13.00 15 23 H 0.10 5.33 6.13 -2.91 -0.02 5.31 15 24 H 0.11 4.19 8.06 -2.91 -0.02 4.17 15 25 H 0.13 3.92 8.06 -2.91 -0.02 3.90 15 26 H 0.14 2.76 6.99 -2.39 -0.02 2.74 15 27 H 0.15 2.56 8.05 -2.39 -0.02 2.54 15 Total: -1.00 -62.34 240.46 6.82 -55.53 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 1.18 Total: 13.48 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 3.00 Total: -46.57 kcal Atomic # 7 Polarization: -63.43 SS G_CDS: 0.61 Total: -62.82 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -62.34 6.82 -55.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368848.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.092 kcal (2) G-P(sol) polarization free energy of solvation -62.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds