Wall clock time and date at job start Mon Mar 30 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36233 * 120.04594 * 2 1 4 4 C 1.40151 * 120.09700 * 179.97438 * 3 2 1 5 5 C 1.43197 * 119.90602 * 180.02562 * 4 3 2 6 6 N 4.78697 * 134.61264 * 0.02562 * 2 1 3 7 7 C 1.40160 * 120.19032 * 0.30058 * 4 3 2 8 8 C 1.36228 * 120.09346 * 359.43770 * 7 4 3 9 9 C 1.50699 * 120.04627 * 180.30085 * 8 7 4 10 10 C 1.40948 * 119.90430 * 0.53835 * 8 7 4 11 11 C 1.40985 * 120.09553 * 179.71865 * 10 8 7 12 12 H 1.08004 * 120.00418 * 48.64122 * 11 10 8 13 13 C 1.40198 * 120.00172 * 228.63465 * 11 10 8 14 14 N 1.30674 * 119.99759 * 18.87054 * 13 11 10 15 15 Si 1.86795 * 120.00158 * 198.86826 * 13 11 10 16 16 H 1.48496 * 109.47258 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47144 * 120.00142 * 15 13 11 18 18 H 1.48501 * 109.47136 * 240.00003 * 15 13 11 19 19 H 1.08998 * 109.47091 * 90.00209 * 1 2 3 20 20 H 1.09001 * 109.46870 * 209.99913 * 1 2 3 21 21 H 1.08999 * 109.47373 * 329.99970 * 1 2 3 22 22 H 1.07998 * 119.95275 * 0.02562 * 3 2 1 23 23 H 1.07996 * 119.95145 * 179.70165 * 7 4 3 24 24 H 1.09011 * 109.47019 * 264.91412 * 9 8 7 25 25 H 1.09003 * 109.47631 * 24.91318 * 9 8 7 26 26 H 1.08997 * 109.47595 * 144.91865 * 9 8 7 27 27 H 0.96991 * 120.00130 * 184.89746 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.1793 0.0000 4 6 3.5906 1.1805 0.0005 5 6 4.3034 2.4224 0.0011 6 7 4.8689 3.4077 0.0015 7 6 4.2965 -0.0303 -0.0053 8 6 3.6223 -1.2141 0.0001 9 6 4.3824 -2.5153 0.0007 10 6 2.2128 -1.2200 0.0000 11 6 1.5110 -2.4428 -0.0004 12 1 1.7781 -3.2191 0.7013 13 6 0.4662 -2.6511 -0.9118 14 7 0.3724 -1.9042 -1.9799 15 14 -0.7916 -3.9962 -0.5992 16 1 -0.4648 -4.6942 0.6701 17 1 -2.1454 -3.3942 -0.4981 18 1 -0.7650 -4.9691 -1.7207 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 1.6491 2.1145 0.0004 23 1 5.3764 -0.0249 -0.0097 24 1 4.4834 -2.8776 -1.0225 25 1 5.3720 -2.3580 0.4297 26 1 3.8417 -3.2518 0.5951 27 1 -0.3887 -2.0001 -2.5734 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044369915.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:53 Heat of formation + Delta-G solvation = 17.202982 kcal Electronic energy + Delta-G solvation = -12131.530730 eV Core-core repulsion = 10045.947086 eV Total energy + Delta-G solvation = -2085.583645 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.12000 -37.41586 -35.56369 -34.00461 -32.35193 -28.99131 -27.25093 -26.76829 -23.48480 -21.08029 -19.28293 -18.38896 -17.07574 -16.27184 -15.74539 -14.91714 -14.49315 -14.26793 -14.13657 -13.82515 -13.68698 -13.52164 -13.38013 -13.00333 -12.83365 -12.76768 -12.21879 -12.15468 -11.87339 -11.48828 -11.29802 -10.67083 -9.21476 -9.00411 -8.53340 -6.35467 0.38733 1.06868 1.44299 1.49469 1.59619 1.87432 2.24359 2.30232 2.90521 3.38131 3.52243 4.33297 4.38442 4.63677 4.89133 4.91569 5.08775 5.14304 5.20465 5.23016 5.28842 5.34064 5.52285 5.85589 5.87893 5.89609 6.15092 6.31793 6.62925 6.73890 6.93104 7.00494 8.42399 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.047048 B = 0.010963 C = 0.009404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.996866 B = 2553.393968 C = 2976.717673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.155 4.155 3 C -0.054 4.054 4 C -0.162 4.162 5 C 0.299 3.701 6 N -0.512 5.512 7 C -0.052 4.052 8 C -0.182 4.182 9 C -0.079 4.079 10 C 0.123 3.877 11 C -0.486 4.486 12 H 0.086 0.914 13 C 0.056 3.944 14 N -0.817 5.817 15 Si 0.954 3.046 16 H -0.258 1.258 17 H -0.266 1.266 18 H -0.276 1.276 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.115 0.885 23 H 0.123 0.877 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 -3.514 2.214 4.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.156 4.156 3 C -0.074 4.074 4 C -0.168 4.168 5 C -0.012 4.012 6 N -0.190 5.190 7 C -0.072 4.072 8 C -0.183 4.183 9 C -0.136 4.136 10 C 0.120 3.880 11 C -0.516 4.516 12 H 0.103 0.897 13 C -0.160 4.160 14 N -0.443 5.443 15 Si 0.776 3.224 16 H -0.181 1.181 17 H -0.191 1.191 18 H -0.201 1.201 19 H 0.074 0.926 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.133 0.867 23 H 0.140 0.860 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.694 -1.995 1.969 2.888 hybrid contribution -0.835 -0.749 -0.202 1.140 sum -1.529 -2.744 1.767 3.604 Atomic orbital electron populations 1.20517 0.91854 1.00235 1.00856 1.19843 0.96166 0.92472 1.07160 1.20447 0.91766 0.97589 0.97629 1.15675 0.92032 0.86048 1.23010 1.26065 0.91814 0.92475 0.90797 1.81094 1.10661 1.12131 1.15145 1.20461 0.98705 0.90501 0.97543 1.20069 0.94075 0.95131 1.09074 1.20396 0.98205 0.93967 1.01037 1.17858 0.91167 0.93304 0.85700 1.19588 1.15149 1.00576 1.16262 0.89652 1.26285 0.98347 0.98569 0.92813 1.69811 1.28082 1.37486 1.08916 0.85568 0.78640 0.78783 0.79361 1.18103 1.19060 1.20108 0.92613 0.92851 0.93065 0.86682 0.85950 0.93066 0.91539 0.92263 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.19 8.30 71.24 0.59 -2.60 15 2 C -0.15 -6.86 5.54 -19.67 -0.11 -6.97 15 3 C -0.05 -2.21 9.32 22.27 0.21 -2.01 15 4 C -0.16 -6.58 5.76 -21.10 -0.12 -6.71 15 5 C 0.30 11.99 15.32 88.33 1.35 13.35 15 6 N -0.51 -21.33 18.54 19.00 0.35 -20.98 15 7 C -0.05 -2.03 9.30 22.27 0.21 -1.82 15 8 C -0.18 -7.64 5.90 -19.67 -0.12 -7.76 15 9 C -0.08 -2.82 9.52 71.24 0.68 -2.14 15 10 C 0.12 5.66 5.20 -21.28 -0.11 5.55 15 11 C -0.49 -22.31 7.21 23.42 0.17 -22.14 15 12 H 0.09 3.81 7.13 -2.91 -0.02 3.79 15 13 C 0.06 2.46 3.53 85.34 0.30 2.76 15 14 N -0.82 -38.05 10.89 21.87 0.24 -37.81 15 15 Si 0.95 34.22 29.60 68.60 2.03 36.25 15 16 H -0.26 -9.06 7.11 99.48 0.71 -8.35 15 17 H -0.27 -9.27 7.11 99.48 0.71 -8.56 15 18 H -0.28 -9.84 7.11 99.48 0.71 -9.14 15 19 H 0.06 2.38 6.71 -2.39 -0.02 2.37 15 20 H 0.05 2.21 6.42 -2.39 -0.02 2.19 15 21 H 0.05 1.79 8.08 -2.39 -0.02 1.77 15 22 H 0.12 4.27 8.06 -2.91 -0.02 4.25 15 23 H 0.12 4.18 8.05 -2.91 -0.02 4.16 15 24 H 0.05 1.82 8.14 -2.38 -0.02 1.80 15 25 H 0.07 1.96 8.04 -2.39 -0.02 1.94 15 26 H 0.06 2.10 6.84 -2.39 -0.02 2.08 15 27 H 0.29 12.30 8.30 -92.72 -0.77 11.53 15 Total: -1.00 -50.05 241.04 6.85 -43.20 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.18 Total: 9.83 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 3.05 Total: -30.49 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.59 Total: -58.79 kcal Atomic # 14 Polarization: 34.22 SS G_CDS: 2.03 Total: 36.25 kcal Total: -50.05 6.85 -43.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044369915.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.404 kcal (2) G-P(sol) polarization free energy of solvation -50.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds