Wall clock time and date at job start Mon Mar 30 2020 02:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86791 * 119.99943 * 2 1 4 4 H 1.48507 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47340 * 299.99693 * 3 2 1 6 6 H 1.48497 * 109.47508 * 60.00130 * 3 2 1 7 7 C 1.38802 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99960 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47326 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.48534 * 110.99830 * 52.60377 * 12 11 10 14 14 C 1.54939 * 103.22817 * 159.71871 * 13 12 11 15 15 C 1.54596 * 102.92012 * 322.58829 * 14 13 12 16 16 C 1.47901 * 111.00170 * 169.99716 * 12 11 10 17 17 H 0.96996 * 119.99820 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47154 * 59.99635 * 10 9 7 19 19 H 1.08998 * 109.46967 * 300.00351 * 10 9 7 20 20 H 1.09002 * 109.47153 * 59.99816 * 11 10 9 21 21 H 1.09001 * 109.46832 * 300.00007 * 11 10 9 22 22 H 1.08996 * 110.66891 * 278.15580 * 13 12 11 23 23 H 1.09001 * 110.67193 * 41.28416 * 13 12 11 24 24 H 1.08998 * 110.72475 * 204.22657 * 14 13 12 25 25 H 1.09000 * 110.72444 * 80.94246 * 14 13 12 26 26 H 1.09001 * 110.31032 * 263.03776 * 15 14 13 27 27 H 1.09004 * 110.30836 * 140.87248 * 15 14 13 28 28 H 1.08999 * 109.91618 * 333.51273 * 16 12 11 29 29 H 1.09004 * 109.91578 * 94.60372 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9792 -5.3243 0.0012 12 7 3.1045 -6.2686 0.0006 13 6 4.0544 -5.9654 1.1015 14 6 4.8279 -7.2961 1.2789 15 6 3.7341 -8.3647 1.0518 16 6 2.6367 -7.6509 0.2410 17 1 -0.4850 0.8400 0.0004 18 1 3.1244 -3.7314 0.8905 19 1 3.1244 -3.7314 -0.8894 20 1 1.3703 -5.4847 -0.8886 21 1 1.3709 -5.4841 0.8914 22 1 4.7323 -5.1617 0.8143 23 1 3.5164 -5.7086 2.0141 24 1 5.2385 -7.3723 2.2857 25 1 5.6165 -7.3865 0.5318 26 1 3.3362 -8.7078 2.0068 27 1 4.1373 -9.2043 0.4855 28 1 1.7066 -7.6346 0.8091 29 1 2.4820 -8.1612 -0.7097 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082692450.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:05 Heat of formation + Delta-G solvation = -11.080569 kcal Electronic energy + Delta-G solvation = -10804.667220 eV Core-core repulsion = 8853.301060 eV Total energy + Delta-G solvation = -1951.366160 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.74912 -33.07876 -32.41486 -29.08498 -28.12613 -25.56765 -22.87679 -20.76224 -20.34201 -17.44426 -15.99328 -15.78077 -14.79772 -14.48973 -14.08096 -13.69021 -12.89500 -12.72603 -12.44439 -11.80131 -11.37195 -11.34697 -11.08518 -11.03966 -10.82040 -10.65269 -10.59694 -10.52642 -9.61940 -9.05693 -8.33185 -8.17595 -6.52521 -6.22316 -3.92579 3.21691 3.22100 3.30735 3.50684 4.20759 4.37773 4.72455 4.75594 5.00290 5.13959 5.36637 5.37152 5.53294 5.61006 5.69496 5.77111 5.78905 5.85338 6.04266 6.10963 6.15328 6.20522 6.50013 6.67287 7.08999 7.26971 7.61992 8.38050 9.24114 10.86039 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.075668 B = 0.006836 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.949010 B = 4095.020895 C = 4378.752526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.920 3.080 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.513 4.513 8 H 0.073 0.927 9 S -0.132 6.132 10 C -0.113 4.113 11 C 0.068 3.932 12 N -0.518 5.518 13 C 0.033 3.967 14 C -0.124 4.124 15 C -0.130 4.130 16 C 0.034 3.966 17 H 0.267 0.733 18 H 0.060 0.940 19 H 0.068 0.932 20 H 0.079 0.921 21 H 0.039 0.961 22 H 0.082 0.918 23 H 0.046 0.954 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.549 -12.506 2.215 14.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.139 4.139 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.661 4.661 8 H 0.092 0.908 9 S 0.095 5.905 10 C -0.262 4.262 11 C -0.061 4.061 12 N -0.243 5.243 13 C -0.095 4.095 14 C -0.163 4.163 15 C -0.168 4.168 16 C -0.094 4.094 17 H 0.076 0.924 18 H 0.079 0.921 19 H 0.087 0.913 20 H 0.098 0.902 21 H 0.057 0.943 22 H 0.101 0.899 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.503 -12.541 1.697 13.800 hybrid contribution 1.350 1.262 0.771 2.002 sum 6.853 -11.280 2.468 13.427 Atomic orbital electron populations 1.70038 1.05920 1.27212 1.47397 1.25025 0.95100 0.99114 0.94617 0.86091 0.79666 0.81777 0.77864 1.19574 1.20554 1.20592 1.22711 0.94554 0.90550 1.58310 0.90849 1.84571 1.09458 0.99614 1.96888 1.23342 1.02996 0.96448 1.03379 1.22023 0.91790 0.90916 1.01332 1.64870 1.14835 1.01557 1.43017 1.23232 0.95383 0.97657 0.93182 1.22493 0.97849 0.94488 1.01426 1.22390 0.96232 0.98380 0.99830 1.22866 0.96775 0.90184 0.99618 0.92370 0.92089 0.91305 0.90216 0.94298 0.89942 0.93586 0.91339 0.90920 0.91745 0.91269 0.93819 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.20 13.22 55.49 0.73 -25.46 15 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 15 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 15 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 7 C -0.51 -14.92 9.50 30.94 0.29 -14.63 15 8 H 0.07 2.08 7.80 -52.49 -0.41 1.67 15 9 S -0.13 -3.53 21.44 -107.50 -2.30 -5.83 15 10 C -0.11 -2.40 5.33 37.16 0.20 -2.20 15 11 C 0.07 1.21 5.03 -3.83 -0.02 1.19 15 12 N -0.52 -8.06 5.40 -230.46 -1.24 -9.30 15 13 C 0.03 0.47 5.10 -1.90 -0.01 0.46 15 14 C -0.12 -1.39 7.06 -24.87 -0.18 -1.56 15 15 C -0.13 -1.37 6.93 -25.38 -0.18 -1.54 15 16 C 0.03 0.43 6.69 -2.76 -0.02 0.41 15 17 H 0.27 7.44 8.31 -40.82 -0.34 7.11 15 18 H 0.06 1.28 6.79 -51.92 -0.35 0.92 15 19 H 0.07 1.50 8.14 -51.92 -0.42 1.08 15 20 H 0.08 1.44 8.14 -51.93 -0.42 1.01 15 21 H 0.04 0.70 7.81 -51.93 -0.41 0.29 15 22 H 0.08 1.21 7.66 -51.93 -0.40 0.82 15 23 H 0.05 0.67 8.00 -51.93 -0.42 0.26 15 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 15 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 15 28 H 0.04 0.55 7.57 -51.93 -0.39 0.16 15 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 15 LS Contribution 253.02 15.07 3.81 3.81 Total: -1.00 -30.74 253.02 -8.50 -39.24 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.47 Total: -3.23 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 0.00 Total: -15.94 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.51 Total: -34.77 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.74 -8.50 -39.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692450.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.160 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds