Wall clock time and date at job start Mon Mar 30 2020 02:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86791 * 119.99943 * 2 1 4 4 H 1.48507 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47340 * 299.99693 * 3 2 1 6 6 H 1.48497 * 109.47508 * 60.00130 * 3 2 1 7 7 C 1.38802 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99804 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00119 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99960 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47326 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.48534 * 110.99830 * 52.60377 * 12 11 10 14 14 C 1.54939 * 103.22817 * 159.71871 * 13 12 11 15 15 C 1.54596 * 102.92012 * 322.58829 * 14 13 12 16 16 C 1.47901 * 111.00170 * 169.99716 * 12 11 10 17 17 H 0.96996 * 119.99820 * 359.97438 * 1 2 3 18 18 H 1.09002 * 109.47154 * 59.99635 * 10 9 7 19 19 H 1.08998 * 109.46967 * 300.00351 * 10 9 7 20 20 H 1.09002 * 109.47153 * 59.99816 * 11 10 9 21 21 H 1.09001 * 109.46832 * 300.00007 * 11 10 9 22 22 H 1.08996 * 110.66891 * 278.15580 * 13 12 11 23 23 H 1.09001 * 110.67193 * 41.28416 * 13 12 11 24 24 H 1.08998 * 110.72475 * 204.22657 * 14 13 12 25 25 H 1.09000 * 110.72444 * 80.94246 * 14 13 12 26 26 H 1.09001 * 110.31032 * 263.03776 * 15 14 13 27 27 H 1.09004 * 110.30836 * 140.87248 * 15 14 13 28 28 H 1.08999 * 109.91618 * 333.51273 * 16 12 11 29 29 H 1.09004 * 109.91578 * 94.60372 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 -0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9792 -5.3243 0.0012 12 7 3.1045 -6.2686 0.0006 13 6 4.0544 -5.9654 1.1015 14 6 4.8279 -7.2961 1.2789 15 6 3.7341 -8.3647 1.0518 16 6 2.6367 -7.6509 0.2410 17 1 -0.4850 0.8400 0.0004 18 1 3.1244 -3.7314 0.8905 19 1 3.1244 -3.7314 -0.8894 20 1 1.3703 -5.4847 -0.8886 21 1 1.3709 -5.4841 0.8914 22 1 4.7323 -5.1617 0.8143 23 1 3.5164 -5.7086 2.0141 24 1 5.2385 -7.3723 2.2857 25 1 5.6165 -7.3865 0.5318 26 1 3.3362 -8.7078 2.0068 27 1 4.1373 -9.2043 0.4855 28 1 1.7066 -7.6346 0.8091 29 1 2.4820 -8.1612 -0.7097 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082692450.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:05 Heat of formation + Delta-G solvation = -31.440952 kcal Electronic energy + Delta-G solvation = -10805.550113 eV Core-core repulsion = 8853.301060 eV Total energy + Delta-G solvation = -1952.249053 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.87633 -34.65181 -34.32435 -30.24745 -29.36125 -27.76837 -24.26550 -21.71282 -21.61543 -19.55440 -17.22965 -16.93129 -16.90637 -15.98248 -15.75814 -14.93498 -14.57813 -14.01280 -13.79061 -13.25230 -13.18136 -12.94719 -12.60891 -12.32538 -12.29419 -12.07501 -11.99459 -11.52791 -11.40094 -11.17116 -10.39234 -9.43024 -8.70690 -8.39731 -6.16916 1.29758 1.37986 1.48038 1.66008 2.24890 2.94723 3.11224 3.30831 3.73450 3.75949 3.99487 4.12384 4.20560 4.35271 4.51903 4.63888 4.71115 4.81904 4.94342 4.98109 4.99088 5.06173 5.19504 5.32762 5.37990 5.92585 6.00407 6.16380 7.02423 8.70114 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.075668 B = 0.006836 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.949010 B = 4095.020895 C = 4378.752526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.016 3.984 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.072 0.928 9 S -0.188 6.188 10 C -0.085 4.085 11 C 0.080 3.920 12 N -0.528 5.528 13 C 0.025 3.975 14 C -0.117 4.117 15 C -0.124 4.124 16 C 0.028 3.972 17 H 0.272 0.728 18 H 0.062 0.938 19 H 0.061 0.939 20 H 0.076 0.924 21 H 0.037 0.963 22 H 0.071 0.929 23 H 0.038 0.962 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.043 0.957 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.915 -13.103 2.528 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.039 5.961 10 C -0.234 4.234 11 C -0.049 4.049 12 N -0.253 5.253 13 C -0.102 4.102 14 C -0.155 4.155 15 C -0.162 4.162 16 C -0.099 4.099 17 H 0.081 0.919 18 H 0.081 0.919 19 H 0.080 0.920 20 H 0.094 0.906 21 H 0.055 0.945 22 H 0.090 0.910 23 H 0.057 0.943 24 H 0.105 0.895 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.061 0.939 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.870 -13.163 2.012 14.984 hybrid contribution 0.932 1.361 0.670 1.780 sum 7.802 -11.802 2.681 14.400 Atomic orbital electron populations 1.70158 1.07667 1.28591 1.47881 1.26088 0.96079 1.03127 0.93626 0.84929 0.78368 0.76455 0.78386 1.18721 1.19565 1.19505 1.23038 0.94694 0.91767 1.59060 0.91011 1.84539 1.13373 1.01151 1.97050 1.23190 1.00388 0.96870 1.02983 1.21809 0.92518 0.89475 1.01097 1.64858 1.13972 1.02449 1.44009 1.23309 0.95239 0.99373 0.92305 1.22486 0.97759 0.92522 1.02757 1.22398 0.95084 0.98371 1.00351 1.23002 0.97689 0.88611 1.00634 0.91862 0.91938 0.92003 0.90556 0.94525 0.91032 0.94344 0.89464 0.90452 0.90465 0.89381 0.93906 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.11 13.22 21.65 0.29 -54.82 15 2 C 0.02 0.91 5.49 84.86 0.47 1.37 15 3 Si 1.00 44.37 29.55 68.60 2.03 46.40 15 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 15 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 7 C -0.54 -31.68 9.50 67.95 0.65 -31.04 15 8 H 0.07 4.10 7.80 -2.91 -0.02 4.08 15 9 S -0.19 -10.29 21.44 -56.49 -1.21 -11.50 15 10 C -0.09 -3.66 5.33 71.98 0.38 -3.27 15 11 C 0.08 2.85 5.03 86.30 0.43 3.28 15 12 N -0.53 -15.82 5.40 -883.03 -4.77 -20.59 15 13 C 0.03 0.69 5.10 86.65 0.44 1.13 15 14 C -0.12 -2.30 7.06 31.80 0.22 -2.07 15 15 C -0.12 -2.22 6.93 31.47 0.22 -2.00 15 16 C 0.03 0.67 6.69 86.44 0.58 1.24 15 17 H 0.27 15.27 8.31 -92.71 -0.77 14.49 15 18 H 0.06 2.64 6.79 -2.39 -0.02 2.62 15 19 H 0.06 2.72 8.14 -2.40 -0.02 2.70 15 20 H 0.08 2.75 8.14 -2.39 -0.02 2.73 15 21 H 0.04 1.31 7.81 -2.39 -0.02 1.29 15 22 H 0.07 2.07 7.66 -2.39 -0.02 2.05 15 23 H 0.04 1.09 8.00 -2.39 -0.02 1.07 15 24 H 0.09 1.40 8.14 -2.39 -0.02 1.38 15 25 H 0.08 1.46 8.14 -2.39 -0.02 1.44 15 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 15 27 H 0.09 1.28 8.14 -2.38 -0.02 1.26 15 28 H 0.04 1.01 7.57 -2.39 -0.02 1.00 15 29 H 0.08 1.84 8.14 -2.38 -0.02 1.82 15 Total: -1.00 -65.76 253.02 0.83 -64.93 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.10 Total: 6.93 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 3.39 Total: -31.35 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -4.48 Total: -75.41 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -10.29 SS G_CDS: -1.21 Total: -11.50 kcal Total: -65.76 0.83 -64.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082692450.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.486 kcal (2) G-P(sol) polarization free energy of solvation -65.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds