Wall clock time and date at job start Mon Mar 30 2020 02:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.50157 * 2 1 4 4 C 1.53098 * 109.50694 * 239.91101 * 2 1 3 5 5 N 1.47018 * 109.25645 * 183.17103 * 4 2 1 6 6 C 1.47008 * 110.74800 * 58.61969 * 5 4 2 7 7 C 1.53100 * 109.26139 * 301.38076 * 6 5 4 8 8 H 1.09002 * 109.50506 * 296.91733 * 7 6 5 9 9 C 1.52996 * 109.50843 * 176.82918 * 7 6 5 10 10 O 1.42907 * 109.47356 * 175.08726 * 9 7 6 11 11 C 1.34921 * 117.00363 * 180.02562 * 10 9 7 12 12 H 1.08008 * 119.99982 * 359.97438 * 11 10 9 13 13 C 1.38636 * 120.00204 * 180.02562 * 11 10 9 14 14 N 1.31577 * 120.00067 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99939 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47212 * 89.99948 * 15 13 11 17 17 H 1.48500 * 109.47393 * 210.00479 * 15 13 11 18 18 H 1.48503 * 109.47087 * 330.00233 * 15 13 11 19 19 O 1.43014 * 109.25637 * 56.85100 * 7 6 5 20 20 H 1.09004 * 109.47132 * 180.08549 * 1 2 3 21 21 H 1.08995 * 109.47279 * 300.08694 * 1 2 3 22 22 H 1.09008 * 109.47083 * 60.09143 * 1 2 3 23 23 H 1.09003 * 109.50607 * 63.23838 * 4 2 1 24 24 H 1.08995 * 109.50942 * 303.10884 * 4 2 1 25 25 H 1.00900 * 110.99437 * 182.39186 * 5 4 2 26 26 H 1.09005 * 109.50750 * 181.44938 * 6 5 4 27 27 H 1.09007 * 109.51006 * 61.31890 * 6 5 4 28 28 H 1.09000 * 109.47445 * 295.08995 * 9 7 6 29 29 H 1.08999 * 109.47346 * 55.08870 * 9 7 6 30 30 H 0.97003 * 119.99946 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2486 5 7 3.5094 -0.7871 -1.2052 6 6 3.9648 -1.4869 0.0048 7 6 3.4343 -0.7558 1.2409 8 1 3.8537 0.2497 1.2770 9 6 3.8384 -1.5234 2.5011 10 8 3.4429 -0.7827 3.6575 11 6 3.7283 -1.3250 4.8595 12 1 4.2335 -2.2780 4.9158 13 6 3.3721 -0.6596 6.0224 14 7 3.6508 -1.1882 7.1946 15 14 2.4976 0.9882 5.9251 16 1 1.0293 0.7684 5.8961 17 1 2.8522 1.8077 7.1116 18 1 2.9162 1.6985 4.6900 19 8 2.0084 -0.6761 1.1659 20 1 -0.3633 -1.0277 0.0015 21 1 -0.3633 0.5152 0.8892 22 1 -0.3634 0.5124 -0.8909 23 1 1.7267 -0.1792 -2.1391 24 1 1.6338 -1.7341 -1.2762 25 1 3.8770 -1.2253 -2.0364 26 1 5.0545 -1.4998 0.0294 27 1 3.5881 -2.5097 -0.0028 28 1 3.3471 -2.4963 2.5072 29 1 4.9195 -1.6624 2.5110 30 1 3.4013 -0.7228 8.0083 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166743193.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:39 Heat of formation + Delta-G solvation = -79.117240 kcal Electronic energy + Delta-G solvation = -13386.247637 eV Core-core repulsion = 10989.178314 eV Total energy + Delta-G solvation = -2397.069323 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.36735 -36.37529 -34.44718 -33.03179 -31.68355 -29.12775 -26.26368 -24.50183 -23.10214 -21.44036 -20.21206 -17.50761 -16.46492 -16.39421 -15.61053 -14.93617 -14.56325 -14.18672 -13.68346 -13.42637 -13.25456 -12.64243 -12.22077 -12.16399 -11.73006 -11.64734 -11.11876 -10.82341 -10.78289 -10.20945 -9.88240 -9.57205 -9.38878 -9.20463 -8.54477 -8.10044 -5.93421 -3.60494 3.48777 3.52656 3.70714 3.94645 4.02506 4.64656 4.78692 4.91373 5.07866 5.23440 5.32653 5.39947 5.52946 5.55641 5.64171 5.65076 5.79614 5.95984 6.09443 6.19020 6.31415 6.36895 6.56320 6.77471 7.18115 7.60455 7.96645 8.42402 9.46914 10.02493 11.19279 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.046033 B = 0.009524 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.110461 B = 2939.337608 C = 3356.896080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.063 0.937 4 C 0.026 3.974 5 N -0.689 5.689 6 C 0.029 3.971 7 C 0.097 3.903 8 H 0.069 0.931 9 C 0.093 3.907 10 O -0.325 6.325 11 C -0.356 4.356 12 H 0.078 0.922 13 C 0.043 3.957 14 N -0.915 5.915 15 Si 0.909 3.091 16 H -0.281 1.281 17 H -0.292 1.292 18 H -0.265 1.265 19 O -0.363 6.363 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.039 0.961 25 H 0.343 0.657 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 1.273 -17.363 17.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 H 0.081 0.919 4 C -0.104 4.104 5 N -0.320 5.320 6 C -0.101 4.101 7 C 0.039 3.961 8 H 0.087 0.913 9 C 0.015 3.985 10 O -0.240 6.240 11 C -0.434 4.434 12 H 0.096 0.904 13 C -0.153 4.153 14 N -0.561 5.561 15 Si 0.737 3.263 16 H -0.207 1.207 17 H -0.219 1.219 18 H -0.189 1.189 19 O -0.282 6.282 20 H 0.080 0.920 21 H 0.087 0.913 22 H 0.086 0.914 23 H 0.099 0.901 24 H 0.057 0.943 25 H 0.161 0.839 26 H 0.106 0.894 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.006 2.035 -16.814 17.201 hybrid contribution -0.279 -0.411 -0.401 0.639 sum -3.285 1.624 -17.215 17.600 Atomic orbital electron populations 1.21724 0.93107 1.02811 1.02445 1.22105 0.94777 0.95817 0.84823 0.91925 1.22671 0.88213 0.99952 0.99552 1.60502 1.09139 1.57424 1.04911 1.22540 1.00984 0.95960 0.90620 1.22185 0.81289 0.99605 0.93063 0.91260 1.21952 0.97222 0.94017 0.85289 1.85266 1.80742 1.46035 1.11992 1.20378 1.36937 1.05110 0.81012 0.90419 1.24297 0.98209 0.99136 0.93708 1.69692 1.49851 1.39716 0.96822 0.86115 0.79700 0.83399 0.77109 1.20734 1.21896 1.18916 1.88157 1.20804 1.77687 1.41524 0.91987 0.91320 0.91383 0.90051 0.94322 0.83913 0.89426 0.94045 0.94513 0.93605 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.57 37.16 0.36 -1.42 16 2 C 0.08 1.24 3.42 -26.68 -0.09 1.15 16 3 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.03 0.31 6.05 -3.71 -0.02 0.29 16 5 N -0.69 -8.57 6.92 -113.49 -0.79 -9.35 16 6 C 0.03 0.40 6.05 -3.71 -0.02 0.38 16 7 C 0.10 1.80 3.09 -26.68 -0.08 1.72 16 8 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 9 C 0.09 2.04 5.68 37.16 0.21 2.26 16 10 O -0.32 -9.07 8.58 -21.02 -0.18 -9.25 16 11 C -0.36 -10.94 10.35 30.88 0.32 -10.62 16 12 H 0.08 2.45 8.00 -52.48 -0.42 2.03 16 13 C 0.04 1.34 5.49 -17.51 -0.10 1.24 16 14 N -0.92 -29.17 13.96 55.48 0.77 -28.39 16 15 Si 0.91 24.35 28.62 -169.99 -4.86 19.48 16 16 H -0.28 -7.45 7.11 56.52 0.40 -7.04 16 17 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 18 H -0.26 -7.10 7.11 56.52 0.40 -6.70 16 19 O -0.36 -7.12 10.08 -39.77 -0.40 -7.52 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 22 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 23 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.34 3.31 8.90 -39.29 -0.35 2.96 16 26 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.27 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 253.96 15.07 3.83 3.83 Total: -1.00 -34.20 253.96 -5.61 -39.81 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: -4.55 Total: -3.62 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 0.57 Total: -4.99 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: -0.01 Total: -37.75 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.58 Total: -16.77 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -4.86 Total: 19.48 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -34.20 -5.61 -39.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166743193.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.304 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds