Wall clock time and date at job start Mon Mar 30 2020 02:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.50157 * 2 1 4 4 C 1.53098 * 109.50694 * 239.91101 * 2 1 3 5 5 N 1.47018 * 109.25645 * 183.17103 * 4 2 1 6 6 C 1.47008 * 110.74800 * 58.61969 * 5 4 2 7 7 C 1.53100 * 109.26139 * 301.38076 * 6 5 4 8 8 H 1.09002 * 109.50506 * 296.91733 * 7 6 5 9 9 C 1.52996 * 109.50843 * 176.82918 * 7 6 5 10 10 O 1.42907 * 109.47356 * 175.08726 * 9 7 6 11 11 C 1.34921 * 117.00363 * 180.02562 * 10 9 7 12 12 H 1.08008 * 119.99982 * 359.97438 * 11 10 9 13 13 C 1.38636 * 120.00204 * 180.02562 * 11 10 9 14 14 N 1.31577 * 120.00067 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99939 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47212 * 89.99948 * 15 13 11 17 17 H 1.48500 * 109.47393 * 210.00479 * 15 13 11 18 18 H 1.48503 * 109.47087 * 330.00233 * 15 13 11 19 19 O 1.43014 * 109.25637 * 56.85100 * 7 6 5 20 20 H 1.09004 * 109.47132 * 180.08549 * 1 2 3 21 21 H 1.08995 * 109.47279 * 300.08694 * 1 2 3 22 22 H 1.09008 * 109.47083 * 60.09143 * 1 2 3 23 23 H 1.09003 * 109.50607 * 63.23838 * 4 2 1 24 24 H 1.08995 * 109.50942 * 303.10884 * 4 2 1 25 25 H 1.00900 * 110.99437 * 182.39186 * 5 4 2 26 26 H 1.09005 * 109.50750 * 181.44938 * 6 5 4 27 27 H 1.09007 * 109.51006 * 61.31890 * 6 5 4 28 28 H 1.09000 * 109.47445 * 295.08995 * 9 7 6 29 29 H 1.08999 * 109.47346 * 55.08870 * 9 7 6 30 30 H 0.97003 * 119.99946 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2486 5 7 3.5094 -0.7871 -1.2052 6 6 3.9648 -1.4869 0.0048 7 6 3.4343 -0.7558 1.2409 8 1 3.8537 0.2497 1.2770 9 6 3.8384 -1.5234 2.5011 10 8 3.4429 -0.7827 3.6575 11 6 3.7283 -1.3250 4.8595 12 1 4.2335 -2.2780 4.9158 13 6 3.3721 -0.6596 6.0224 14 7 3.6508 -1.1882 7.1946 15 14 2.4976 0.9882 5.9251 16 1 1.0293 0.7684 5.8961 17 1 2.8522 1.8077 7.1116 18 1 2.9162 1.6985 4.6900 19 8 2.0084 -0.6761 1.1659 20 1 -0.3633 -1.0277 0.0015 21 1 -0.3633 0.5152 0.8892 22 1 -0.3634 0.5124 -0.8909 23 1 1.7267 -0.1792 -2.1391 24 1 1.6338 -1.7341 -1.2762 25 1 3.8770 -1.2253 -2.0364 26 1 5.0545 -1.4998 0.0294 27 1 3.5881 -2.5097 -0.0028 28 1 3.3471 -2.4963 2.5072 29 1 4.9195 -1.6624 2.5110 30 1 3.4013 -0.7228 8.0083 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166743193.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:39 Heat of formation + Delta-G solvation = -106.248948 kcal Electronic energy + Delta-G solvation = -13387.424156 eV Core-core repulsion = 10989.178314 eV Total energy + Delta-G solvation = -2398.245842 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.63879 -38.40206 -35.60558 -34.54498 -33.77848 -30.52281 -27.65618 -26.24312 -24.67335 -22.85592 -21.42113 -19.76973 -17.88912 -17.63045 -17.47813 -16.20473 -15.99769 -15.59825 -15.16535 -15.11313 -15.03409 -14.28659 -13.79766 -13.51946 -13.19342 -12.90257 -12.77931 -12.35446 -12.22096 -11.91808 -11.69014 -11.54787 -11.34817 -10.63243 -10.40557 -9.55648 -8.30108 -6.00261 1.34883 1.39619 1.58682 2.42664 2.67549 2.92859 3.02970 3.37875 3.85099 3.94356 4.04839 4.14637 4.25254 4.41283 4.43648 4.53128 4.63640 4.67216 4.73596 4.88791 4.97360 5.09263 5.24663 5.53901 5.74295 6.10516 6.31704 6.37530 7.08945 7.78407 8.85604 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.046033 B = 0.009524 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.110461 B = 2939.337608 C = 3356.896080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.055 0.945 4 C 0.031 3.969 5 N -0.690 5.690 6 C 0.039 3.961 7 C 0.100 3.900 8 H 0.057 0.943 9 C 0.084 3.916 10 O -0.345 6.345 11 C -0.361 4.361 12 H 0.053 0.947 13 C -0.012 4.012 14 N -0.951 5.951 15 Si 0.975 3.025 16 H -0.276 1.276 17 H -0.274 1.274 18 H -0.268 1.268 19 O -0.400 6.400 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.103 0.897 23 H 0.113 0.887 24 H 0.041 0.959 25 H 0.364 0.636 26 H 0.105 0.895 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 2.162 -19.422 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.012 3.988 3 H 0.073 0.927 4 C -0.098 4.098 5 N -0.324 5.324 6 C -0.090 4.090 7 C 0.042 3.958 8 H 0.075 0.925 9 C 0.007 3.993 10 O -0.261 6.261 11 C -0.440 4.440 12 H 0.071 0.929 13 C -0.205 4.205 14 N -0.598 5.598 15 Si 0.800 3.200 16 H -0.201 1.201 17 H -0.199 1.199 18 H -0.193 1.193 19 O -0.320 6.320 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.122 0.878 23 H 0.131 0.869 24 H 0.059 0.941 25 H 0.184 0.816 26 H 0.123 0.877 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.079 0.921 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.552 2.910 -18.906 19.455 hybrid contribution -0.093 -0.748 0.171 0.773 sum -3.645 2.162 -18.734 19.208 Atomic orbital electron populations 1.21752 0.91426 1.03069 1.03402 1.22462 0.96222 0.95447 0.84647 0.92656 1.22654 0.87908 1.00145 0.99120 1.60444 1.09524 1.57441 1.04972 1.22367 1.01844 0.95368 0.89459 1.22081 0.81565 0.98935 0.93229 0.92543 1.22296 0.98197 0.94103 0.84699 1.85204 1.81292 1.47240 1.12338 1.20400 1.36609 1.04338 0.82635 0.92935 1.25168 0.99090 1.02912 0.93374 1.69785 1.50933 1.41433 0.97606 0.85122 0.78528 0.78944 0.77419 1.20130 1.19923 1.19278 1.88098 1.21049 1.78521 1.44317 0.92034 0.92982 0.87807 0.86900 0.94064 0.81597 0.87654 0.93771 0.94929 0.92086 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.57 71.98 0.69 -2.49 16 2 C 0.07 1.96 3.42 30.63 0.10 2.07 16 3 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.03 0.66 6.05 86.31 0.52 1.18 16 5 N -0.69 -15.05 6.92 -512.98 -3.55 -18.61 16 6 C 0.04 1.04 6.05 86.32 0.52 1.56 16 7 C 0.10 3.67 3.09 30.63 0.09 3.77 16 8 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 9 C 0.08 3.72 5.68 71.98 0.41 4.13 16 10 O -0.34 -19.49 8.58 -77.56 -0.67 -20.15 16 11 C -0.36 -22.66 10.35 67.92 0.70 -21.95 16 12 H 0.05 3.45 8.00 -2.91 -0.02 3.43 16 13 C -0.01 -0.76 5.49 84.83 0.47 -0.29 16 14 N -0.95 -61.20 13.96 21.61 0.30 -60.90 16 15 Si 0.98 50.37 28.62 68.60 1.96 52.33 16 16 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 17 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 18 H -0.27 -13.86 7.11 99.48 0.71 -13.16 16 19 O -0.40 -15.51 10.08 -144.64 -1.46 -16.97 16 20 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 21 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.36 5.63 8.90 -89.69 -0.80 4.84 16 26 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 27 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.28 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -73.74 253.96 0.41 -73.33 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 0.31 Total: 3.00 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 3.51 Total: -12.03 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -3.25 Total: -79.51 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -2.12 Total: -37.12 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 1.96 Total: 52.33 kcal Total: -73.74 0.41 -73.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166743193.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.920 kcal (2) G-P(sol) polarization free energy of solvation -73.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds