Wall clock time and date at job start Mon Mar 30 2020 02:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39563 * 120.13771 * 213.95131 * 3 2 1 5 5 C 1.37958 * 119.85205 * 180.02562 * 4 3 2 6 6 C 1.38365 * 120.14303 * 0.02720 * 5 4 3 7 7 C 1.38321 * 120.28995 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.93431 * 179.97438 * 7 6 5 9 9 H 1.08992 * 109.47152 * 199.99883 * 8 7 6 10 10 N 1.46906 * 109.46867 * 320.00104 * 8 7 6 11 11 C 1.50706 * 109.46824 * 79.99218 * 8 7 6 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 299.99813 * 15 13 11 18 18 H 1.48498 * 109.47295 * 60.00420 * 15 13 11 19 19 C 1.37999 * 120.13835 * 0.25050 * 7 6 5 20 20 H 4.52081 * 14.02029 * 359.97438 * 4 2 1 21 21 H 1.07991 * 120.07042 * 0.02562 * 4 3 2 22 22 H 1.07995 * 119.92498 * 180.02562 * 5 4 3 23 23 H 1.07997 * 119.85568 * 179.97438 * 6 5 4 24 24 H 1.00899 * 110.99290 * 296.04000 * 10 8 7 25 25 H 1.00897 * 111.00195 * 59.99123 * 10 8 7 26 26 H 0.97000 * 119.99706 * 359.97438 * 14 13 11 27 27 H 1.08005 * 120.07155 * 179.73157 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3063 1.0021 0.6741 5 6 4.6858 0.9974 0.6698 6 6 5.3751 0.0029 -0.0013 7 6 4.6871 -0.9926 -0.6713 8 6 5.4459 -2.0715 -1.4001 9 1 4.7941 -2.5389 -2.1381 10 7 6.6079 -1.4806 -2.0775 11 6 5.9141 -3.1101 -0.4136 12 1 5.6847 -3.0001 0.6360 13 6 6.6353 -4.2007 -0.8512 14 7 6.9150 -4.3344 -2.1293 15 14 7.2151 -5.4885 0.3715 16 1 7.9640 -6.5510 -0.3465 17 1 8.1025 -4.8518 1.3777 18 1 6.0402 -6.0862 1.0553 19 6 3.3071 -0.9966 -0.6786 20 1 -1.0499 -0.0005 -0.0009 21 1 2.7694 1.7791 1.1978 22 1 5.2289 1.7715 1.1914 23 1 6.4551 0.0038 -0.0020 24 1 6.3176 -0.8274 -2.7896 25 1 7.2279 -1.0405 -1.4142 26 1 6.6136 -3.6658 -2.7641 27 1 2.7709 -1.7719 -1.2058 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211717708.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:06 Heat of formation + Delta-G solvation = 69.923046 kcal Electronic energy + Delta-G solvation = -11858.073142 eV Core-core repulsion = 9774.775611 eV Total energy + Delta-G solvation = -2083.297531 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.01076 -35.19546 -33.27633 -31.46374 -30.18875 -29.15683 -25.61752 -23.23395 -22.35512 -20.77213 -18.17940 -16.70167 -16.21767 -15.06325 -14.84935 -14.24506 -13.72148 -13.39173 -13.20791 -12.84165 -12.13320 -11.91216 -11.19026 -10.87710 -10.78031 -10.70859 -10.43993 -10.14732 -9.98985 -8.95715 -8.36248 -8.24693 -7.95377 -7.51076 -6.19308 -4.02840 1.32408 1.86762 2.89773 3.30504 3.48487 3.49551 3.68338 4.37813 4.45348 4.61687 5.29251 5.34619 5.44144 5.63385 5.77450 5.90936 6.02622 6.08045 6.40608 6.50141 6.79672 6.84678 6.88985 7.33254 7.40228 7.67957 7.95551 8.26722 8.63055 8.73676 9.03787 9.80786 11.20549 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.039393 B = 0.008978 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.610867 B = 3117.980536 C = 3312.061624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.006 4.006 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.109 4.109 7 C -0.067 4.067 8 C 0.236 3.764 9 H 0.039 0.961 10 N -0.829 5.829 11 C -0.609 4.609 12 H 0.047 0.953 13 C 0.038 3.962 14 N -0.890 5.890 15 Si 1.064 2.936 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.290 1.290 19 C -0.094 4.094 20 H 0.221 0.779 21 H 0.116 0.884 22 H 0.119 0.881 23 H 0.121 0.879 24 H 0.303 0.697 25 H 0.326 0.674 26 H 0.290 0.710 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 9.019 3.781 11.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.128 4.128 3 C -0.006 4.006 4 C -0.137 4.137 5 C -0.141 4.141 6 C -0.127 4.127 7 C -0.069 4.069 8 C 0.127 3.873 9 H 0.057 0.943 10 N -0.356 5.356 11 C -0.648 4.648 12 H 0.065 0.935 13 C -0.171 4.171 14 N -0.523 5.523 15 Si 0.893 3.107 16 H -0.209 1.209 17 H -0.216 1.216 18 H -0.217 1.217 19 C -0.112 4.112 20 H 0.238 0.762 21 H 0.134 0.866 22 H 0.137 0.863 23 H 0.139 0.861 24 H 0.113 0.887 25 H 0.140 0.860 26 H 0.102 0.898 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.572 6.832 3.640 9.538 hybrid contribution -1.456 2.415 0.434 2.853 sum -7.028 9.246 4.074 12.308 Atomic orbital electron populations 1.24737 0.95641 1.00866 1.01060 1.20275 0.92192 1.00136 1.00175 1.15996 0.86162 0.97390 1.01087 1.20942 0.94145 0.98236 1.00419 1.20970 0.93758 0.99108 1.00234 1.21112 1.00145 0.94276 0.97158 1.21467 0.93640 0.95906 0.95879 1.18392 0.87383 0.89055 0.92424 0.94345 1.59458 1.19634 1.39214 1.17339 1.21666 1.41387 1.08031 0.93702 0.93511 1.25639 0.93945 0.98304 0.99257 1.70557 1.41456 1.37994 1.02342 0.83636 0.76329 0.75996 0.74708 1.20871 1.21611 1.21658 1.21150 0.94092 0.97048 0.98935 0.76187 0.86582 0.86304 0.86140 0.88689 0.86039 0.89767 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.76 19.25 29.55 0.57 -2.20 15 2 C -0.13 -2.11 13.24 -38.84 -0.51 -2.62 15 3 C -0.01 -0.11 5.72 -107.00 -0.61 -0.73 15 4 C -0.12 -1.94 9.75 -39.19 -0.38 -2.32 15 5 C -0.12 -1.98 10.03 -39.64 -0.40 -2.37 15 6 C -0.11 -2.03 9.28 -39.50 -0.37 -2.39 15 7 C -0.07 -1.41 4.88 -104.68 -0.51 -1.92 15 8 C 0.24 5.77 2.47 -70.01 -0.17 5.60 15 9 H 0.04 1.02 7.86 -51.93 -0.41 0.61 15 10 N -0.83 -18.66 7.61 -6.65 -0.05 -18.71 15 11 C -0.61 -16.87 8.70 -34.44 -0.30 -17.17 15 12 H 0.05 1.32 7.74 -52.49 -0.41 0.92 15 13 C 0.04 1.09 5.39 -17.82 -0.10 1.00 15 14 N -0.89 -26.70 13.51 55.43 0.75 -25.95 15 15 Si 1.06 25.23 29.90 -169.99 -5.08 20.15 15 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 19 C -0.09 -1.87 9.37 -39.19 -0.37 -2.24 15 20 H 0.22 1.93 7.80 -54.09 -0.42 1.51 15 21 H 0.12 1.59 8.06 -52.49 -0.42 1.16 15 22 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 23 H 0.12 2.17 6.65 -52.49 -0.35 1.82 15 24 H 0.30 6.00 9.06 -39.29 -0.36 5.65 15 25 H 0.33 7.01 7.33 -39.29 -0.29 6.73 15 26 H 0.29 8.67 6.39 -40.82 -0.26 8.41 15 27 H 0.12 2.39 8.03 -52.48 -0.42 1.97 15 LS Contribution 247.41 15.07 3.73 3.73 Total: -1.00 -30.67 247.41 -6.36 -37.03 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -2.55 Total: 11.11 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -3.15 Total: -27.36 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.70 Total: -44.66 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.67 -6.36 -37.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211717708.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.952 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds