Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38005 * 120.04971 * 2 1 4 4 C 1.38904 * 120.69537 * 180.02562 * 3 2 1 5 5 C 1.36462 * 120.59370 * 0.02562 * 4 3 2 6 6 C 1.40454 * 119.80488 * 359.97438 * 5 4 3 7 7 C 1.40934 * 133.09667 * 179.97438 * 6 5 4 8 8 C 1.39125 * 107.49648 * 180.02562 * 7 6 5 9 9 C 1.39923 * 125.68920 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99705 * 179.97438 * 9 8 7 11 11 C 1.40183 * 120.00134 * 359.97438 * 9 8 7 12 12 N 1.30755 * 119.99977 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00285 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46827 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47428 * 119.99783 * 13 11 9 16 16 H 1.48496 * 109.47228 * 240.00170 * 13 11 9 17 17 N 1.38315 * 108.61552 * 0.02562 * 8 7 6 18 18 H 0.96997 * 125.60000 * 180.02562 * 17 8 7 19 19 C 1.38047 * 108.79730 * 359.97438 * 17 8 7 20 20 H 1.09000 * 109.46766 * 269.97312 * 1 2 3 21 21 H 1.08994 * 109.47115 * 29.97437 * 1 2 3 22 22 H 1.09004 * 109.46969 * 149.97815 * 1 2 3 23 23 H 1.08001 * 119.65090 * 0.02562 * 3 2 1 24 24 H 1.08000 * 119.69870 * 179.97438 * 4 3 2 25 25 H 1.08004 * 120.09731 * 180.02562 * 5 4 3 26 26 H 1.08003 * 126.24680 * 0.28847 * 7 6 5 27 27 H 0.97000 * 119.99881 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1946 0.0000 4 6 3.5870 1.2102 -0.0005 5 6 4.2947 0.0435 -0.0016 6 6 3.6148 -1.1855 -0.0016 7 6 4.0490 -2.5263 -0.0030 8 6 2.9156 -3.3331 -0.0028 9 6 2.9096 -4.7323 -0.0034 10 1 1.9720 -5.2682 -0.0028 11 6 4.1206 -5.4384 -0.0048 12 7 5.2558 -4.7895 -0.0061 13 14 4.1127 -7.3064 -0.0049 14 1 2.7105 -7.7954 -0.0039 15 1 4.8091 -7.8044 -1.2182 16 1 4.8119 -7.8044 1.2068 17 7 1.7958 -2.5212 -0.0019 18 1 0.8757 -2.8284 -0.0012 19 6 2.2027 -1.2021 -0.0010 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8902 -0.5134 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6532 2.1270 0.0004 24 1 4.1115 2.1543 -0.0009 25 1 5.3746 0.0650 -0.0016 26 1 5.0744 -2.8654 0.0000 27 1 6.0937 -5.2781 -0.0075 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213972874.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = 15.234354 kcal Electronic energy + Delta-G solvation = -12104.573840 eV Core-core repulsion = 10018.904830 eV Total energy + Delta-G solvation = -2085.669011 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.49037 -37.66733 -35.38642 -33.78547 -30.67867 -30.05537 -27.39827 -26.88134 -22.53606 -22.13164 -20.75422 -19.23319 -17.80153 -17.22469 -15.86801 -15.66582 -15.12686 -14.81458 -14.26664 -13.96065 -13.80225 -13.43922 -13.12648 -12.96850 -12.94555 -12.34370 -12.06908 -11.93996 -11.66239 -11.34062 -11.22685 -10.01174 -8.93665 -8.53699 -8.20627 -6.34378 0.57590 1.11090 1.40223 1.42725 1.57212 2.17020 2.25020 2.85111 3.24881 3.46734 4.15905 4.31353 4.50507 4.63000 4.80985 4.84641 4.96539 5.05262 5.15788 5.27666 5.36364 5.62276 5.80530 5.90731 5.98658 6.06982 6.16697 6.54360 6.76459 6.83508 7.09009 7.41090 8.33631 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.059213 B = 0.009472 C = 0.008202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.757537 B = 2955.320427 C = 3412.934625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.097 4.097 3 C -0.172 4.172 4 C -0.132 4.132 5 C -0.160 4.160 6 C -0.083 4.083 7 C -0.371 4.371 8 C 0.238 3.762 9 C -0.475 4.475 10 H 0.088 0.912 11 C 0.026 3.974 12 N -0.814 5.814 13 Si 1.008 2.992 14 H -0.253 1.253 15 H -0.265 1.265 16 H -0.265 1.265 17 N -0.621 5.621 18 H 0.408 0.592 19 C 0.022 3.978 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.052 0.948 23 H 0.142 0.858 24 H 0.135 0.865 25 H 0.104 0.896 26 H 0.142 0.858 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 2.879 0.023 6.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C -0.190 4.190 4 C -0.152 4.152 5 C -0.179 4.179 6 C -0.089 4.089 7 C -0.394 4.394 8 C 0.131 3.869 9 C -0.507 4.507 10 H 0.106 0.894 11 C -0.190 4.190 12 N -0.440 5.440 13 Si 0.827 3.173 14 H -0.176 1.176 15 H -0.190 1.190 16 H -0.190 1.190 17 N -0.230 5.230 18 H 0.245 0.755 19 C -0.082 4.082 20 H 0.090 0.910 21 H 0.104 0.896 22 H 0.071 0.929 23 H 0.160 0.840 24 H 0.153 0.847 25 H 0.122 0.878 26 H 0.159 0.841 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.229 2.822 0.021 5.942 hybrid contribution 0.105 -0.924 0.005 0.930 sum -5.125 1.898 0.025 5.465 Atomic orbital electron populations 1.20642 0.89820 1.02783 1.02302 1.19209 0.96452 0.89963 1.04396 1.20704 0.93866 0.96418 1.08051 1.20649 0.94586 0.97087 1.02836 1.20386 0.98672 0.91540 1.07338 1.18874 0.93324 0.94798 1.01858 1.21735 0.99271 0.89658 1.28756 1.18427 0.84331 0.91222 0.92918 1.19123 0.95231 0.89208 1.47173 0.89403 1.26894 0.93651 1.06835 0.91635 1.69845 0.99659 1.39598 1.34915 0.84769 0.79873 0.73748 0.78866 1.17623 1.19020 1.19009 1.42050 1.07480 1.03828 1.69692 0.75461 1.18430 0.93818 0.85336 1.10617 0.91021 0.89587 0.92905 0.84034 0.84709 0.87827 0.84104 0.90149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.91 10.02 71.24 0.71 -2.20 15 2 C -0.10 -3.85 5.89 -19.76 -0.12 -3.96 15 3 C -0.17 -6.25 9.68 22.37 0.22 -6.03 15 4 C -0.13 -5.12 9.97 22.01 0.22 -4.90 15 5 C -0.16 -7.47 10.08 22.39 0.23 -7.25 15 6 C -0.08 -4.48 6.14 -21.35 -0.13 -4.61 15 7 C -0.37 -21.80 9.80 23.14 0.23 -21.57 15 8 C 0.24 13.24 6.83 38.74 0.26 13.50 15 9 C -0.47 -25.07 9.45 23.15 0.22 -24.85 15 10 H 0.09 4.24 7.85 -2.91 -0.02 4.22 15 11 C 0.03 1.28 5.50 85.33 0.47 1.74 15 12 N -0.81 -43.31 10.18 21.87 0.22 -43.09 15 13 Si 1.01 37.19 29.56 68.60 2.03 39.22 15 14 H -0.25 -8.86 7.11 99.48 0.71 -8.15 15 15 H -0.27 -9.44 7.11 99.48 0.71 -8.73 15 16 H -0.27 -9.43 7.11 99.48 0.71 -8.73 15 17 N -0.62 -29.96 6.22 -180.17 -1.12 -31.08 15 18 H 0.41 16.65 8.80 -92.71 -0.82 15.83 15 19 C 0.02 1.07 6.91 39.05 0.27 1.34 15 20 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.09 2.06 8.09 -2.39 -0.02 2.04 15 22 H 0.05 1.53 7.93 -2.38 -0.02 1.51 15 23 H 0.14 4.00 8.06 -2.91 -0.02 3.98 15 24 H 0.14 4.16 8.06 -2.91 -0.02 4.14 15 25 H 0.10 4.57 8.06 -2.91 -0.02 4.55 15 26 H 0.14 8.74 5.58 -2.91 -0.02 8.72 15 27 H 0.29 13.67 8.29 -92.71 -0.77 12.90 15 Total: -1.00 -63.64 236.39 4.08 -59.56 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: 0.37 Total: 34.18 kcal Atomic # 6 Polarization: -61.36 SS G_CDS: 2.58 Total: -58.79 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -0.90 Total: -74.17 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -63.64 4.08 -59.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213972874.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.796 kcal (2) G-P(sol) polarization free energy of solvation -63.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds