Wall clock time and date at job start Mon Mar 30 2020 01:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38946 * 119.64630 * 2 1 4 4 C 1.36430 * 120.59112 * 179.97438 * 3 2 1 5 5 C 1.40480 * 119.80559 * 359.97438 * 4 3 2 6 6 C 1.40939 * 133.09335 * 180.31171 * 5 4 3 7 7 C 1.39126 * 107.49444 * 180.13212 * 6 5 4 8 8 C 1.39925 * 125.69484 * 179.84070 * 7 6 5 9 9 H 1.07999 * 120.00059 * 179.69410 * 8 7 6 10 10 C 1.40184 * 119.99556 * 359.68953 * 8 7 6 11 11 N 1.30743 * 120.00513 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99755 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47118 * 90.00183 * 12 10 8 14 14 H 1.48499 * 109.47293 * 210.00187 * 12 10 8 15 15 H 1.48504 * 109.47104 * 330.00432 * 12 10 8 16 16 N 1.38313 * 108.61153 * 359.57690 * 7 6 5 17 17 H 0.97000 * 125.60917 * 180.29904 * 16 7 6 18 18 C 1.38044 * 108.79197 * 0.26511 * 16 7 6 19 19 C 1.37953 * 119.65465 * 179.97438 * 2 1 3 20 20 H 1.09002 * 109.47010 * 90.00551 * 1 2 3 21 21 H 1.09005 * 109.46870 * 210.00036 * 1 2 3 22 22 H 1.08990 * 109.47571 * 330.00227 * 1 2 3 23 23 H 1.08005 * 119.70276 * 359.97335 * 3 2 1 24 24 H 1.08001 * 120.09624 * 179.97438 * 4 3 2 25 25 H 1.07998 * 126.24709 * 359.97438 * 6 5 4 26 26 H 0.97005 * 120.00232 * 179.97438 * 11 10 8 27 27 H 1.07999 * 120.05303 * 0.04756 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.2076 0.0000 4 6 3.5584 1.2301 0.0005 5 6 4.2767 0.0228 0.0016 6 6 5.6535 -0.2785 0.0080 7 6 5.7784 -1.6641 0.0026 8 6 6.9835 -2.3752 0.0030 9 1 6.9733 -3.4551 0.0036 10 6 8.2041 -1.6857 0.0027 11 7 8.2165 -0.3783 0.0025 12 14 9.8129 -2.6349 0.0040 13 1 10.2397 -2.8877 -1.3957 14 1 10.8552 -1.8416 0.7036 15 1 9.6229 -3.9302 0.7052 16 7 4.5126 -2.2215 0.0028 17 1 4.3135 -3.1708 0.0038 18 6 3.5790 -1.2046 0.0022 19 6 2.1896 -1.1988 0.0005 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3634 0.8899 0.5137 23 1 1.6437 2.1367 -0.0004 24 1 4.0845 2.1733 0.0001 25 1 6.4634 0.4358 0.0132 26 1 9.0611 0.0987 0.0027 27 1 1.6448 -2.1314 0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213972964.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:25 Heat of formation + Delta-G solvation = 30.986771 kcal Electronic energy + Delta-G solvation = -11981.508749 eV Core-core repulsion = 9896.522814 eV Total energy + Delta-G solvation = -2084.985935 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.62670 -36.18355 -33.62789 -31.36740 -29.39277 -27.97845 -26.98932 -23.77681 -21.40769 -19.65882 -19.36413 -17.44520 -15.83802 -15.40054 -14.41067 -13.91597 -13.29069 -13.10602 -12.70737 -12.52887 -12.25215 -11.67412 -11.51123 -11.38273 -11.13408 -10.78705 -10.39076 -10.22431 -9.85008 -9.60681 -9.42918 -8.31044 -7.06635 -6.71358 -6.41507 -4.37466 2.32595 2.81802 2.98177 3.00322 3.04194 3.80314 4.08906 4.61592 5.05436 5.38020 5.73956 5.78252 6.03502 6.13646 6.16285 6.34130 6.54130 6.79670 6.91531 6.99584 7.04050 7.32252 7.63046 7.67705 7.77960 7.87491 8.02395 8.35194 8.67487 8.77780 9.00022 9.23322 10.12561 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.084330 B = 0.008268 C = 0.007561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.951107 B = 3385.557026 C = 3702.362586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.154 4.154 3 C -0.135 4.135 4 C -0.133 4.133 5 C -0.048 4.048 6 C -0.325 4.325 7 C 0.260 3.740 8 C -0.445 4.445 9 H 0.076 0.924 10 C 0.072 3.928 11 N -0.779 5.779 12 Si 0.928 3.072 13 H -0.268 1.268 14 H -0.275 1.275 15 H -0.263 1.263 16 N -0.629 5.629 17 H 0.396 0.604 18 C 0.039 3.961 19 C -0.116 4.116 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.164 0.836 26 H 0.281 0.719 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 -1.128 -0.001 4.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C -0.155 4.155 4 C -0.152 4.152 5 C -0.053 4.053 6 C -0.348 4.348 7 C 0.154 3.846 8 C -0.478 4.478 9 H 0.094 0.906 10 C -0.148 4.148 11 N -0.404 5.404 12 Si 0.752 3.248 13 H -0.193 1.193 14 H -0.200 1.200 15 H -0.187 1.187 16 N -0.237 5.237 17 H 0.230 0.770 18 C -0.066 4.066 19 C -0.138 4.138 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.116 0.884 24 H 0.120 0.880 25 H 0.181 0.819 26 H 0.092 0.908 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.944 -1.011 0.005 4.072 hybrid contribution 0.589 -0.876 -0.017 1.056 sum -3.355 -1.887 -0.012 3.849 Atomic orbital electron populations 1.20496 0.92904 1.00905 1.00467 1.18993 0.94125 0.92555 1.09864 1.20095 0.93931 0.95915 1.05535 1.20129 0.93208 0.96081 1.05786 1.18550 0.94976 0.91297 1.00475 1.21784 0.93014 0.94502 1.25494 1.18164 0.82087 0.91965 0.92432 1.18689 0.88874 0.94291 1.45937 0.90573 1.25779 1.01124 0.94979 0.92883 1.69710 1.28442 1.07776 1.34434 0.85992 0.79662 0.79916 0.79225 1.19350 1.19951 1.18708 1.42196 1.05464 1.06093 1.69965 0.76971 1.18214 0.90098 0.88860 1.09382 1.19562 0.90394 0.96620 1.07206 0.93064 0.93157 0.92917 0.88429 0.88020 0.81879 0.90783 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 9.99 36.01 0.36 -1.04 15 2 C -0.15 -3.08 5.89 -104.46 -0.62 -3.69 15 3 C -0.14 -2.78 9.61 -39.97 -0.38 -3.17 15 4 C -0.13 -3.07 10.08 -39.39 -0.40 -3.46 15 5 C -0.05 -1.24 6.14 -106.91 -0.66 -1.90 15 6 C -0.33 -9.01 9.80 -38.23 -0.37 -9.38 15 7 C 0.26 6.93 6.83 -83.98 -0.57 6.36 15 8 C -0.44 -11.41 9.45 -38.22 -0.36 -11.77 15 9 H 0.08 1.81 7.85 -52.49 -0.41 1.40 15 10 C 0.07 1.75 5.50 -17.28 -0.10 1.65 15 11 N -0.78 -19.77 10.18 55.56 0.57 -19.20 15 12 Si 0.93 18.06 29.56 -169.99 -5.03 13.04 15 13 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 14 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 15 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 16 N -0.63 -14.97 6.22 -8.29 -0.05 -15.02 15 17 H 0.40 8.01 8.96 -40.82 -0.37 7.64 15 18 C 0.04 0.94 7.24 -83.69 -0.61 0.34 15 19 C -0.12 -2.48 9.70 -39.42 -0.38 -2.86 15 20 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 21 H 0.05 0.71 8.08 -51.93 -0.42 0.29 15 22 H 0.05 0.73 8.08 -51.93 -0.42 0.31 15 23 H 0.10 1.72 8.06 -52.48 -0.42 1.30 15 24 H 0.10 2.17 8.06 -52.49 -0.42 1.74 15 25 H 0.16 4.68 5.58 -52.49 -0.29 4.39 15 26 H 0.28 6.42 8.29 -40.82 -0.34 6.08 15 27 H 0.09 1.77 8.06 -52.49 -0.42 1.35 15 LS Contribution 236.67 15.07 3.57 3.57 Total: -1.00 -28.21 236.67 -7.77 -35.97 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -2.74 Total: 10.58 kcal Atomic # 6 Polarization: -24.84 SS G_CDS: -4.09 Total: -28.93 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.51 Total: -34.23 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -28.21 -7.77 -35.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213972964.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.957 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds