Wall clock time and date at job start Mon Mar 30 2020 01:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36473 * 120.09748 * 2 1 4 4 C 1.38891 * 120.59053 * 179.97438 * 3 2 1 5 5 C 1.38010 * 120.70085 * 0.02562 * 4 3 2 6 6 C 1.38890 * 119.89147 * 359.97438 * 5 4 3 7 7 N 1.38044 * 132.80235 * 179.97438 * 6 5 4 8 8 H 0.96998 * 125.60967 * 0.04210 * 7 6 5 9 9 C 1.38319 * 108.79647 * 180.02562 * 7 6 5 10 10 C 1.39920 * 125.69708 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00368 * 179.97438 * 10 9 7 12 12 C 1.40190 * 119.99781 * 359.96989 * 10 9 7 13 13 N 1.30757 * 119.99719 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00311 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46813 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47037 * 119.99787 * 14 12 10 17 17 H 1.48491 * 109.47342 * 240.00379 * 14 12 10 18 18 C 1.39133 * 108.61413 * 359.97438 * 9 7 6 19 19 C 1.40445 * 120.10088 * 179.71796 * 2 1 3 20 20 H 1.09002 * 109.47152 * 90.00173 * 1 2 3 21 21 H 1.09001 * 109.46980 * 330.00274 * 1 2 3 22 22 H 1.09004 * 109.47113 * 210.00255 * 1 2 3 23 23 H 1.08002 * 119.70379 * 359.95204 * 3 2 1 24 24 H 1.08003 * 119.65274 * 179.97438 * 4 3 2 25 25 H 1.08003 * 120.05225 * 179.97438 * 5 4 3 26 26 H 0.96998 * 119.99896 * 179.97438 * 13 12 10 27 27 H 1.07999 * 126.25073 * 180.02562 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1914 1.1807 0.0000 4 6 3.5803 1.1927 0.0005 5 6 4.2951 0.0121 0.0005 6 6 3.6235 -1.2037 0.0006 7 7 4.0566 -2.5144 0.0001 8 1 4.9825 -2.8033 0.0003 9 6 2.9531 -3.3484 -0.0002 10 6 2.9868 -4.7472 -0.0002 11 1 2.0649 -5.3096 0.0000 12 6 4.2175 -5.4186 -0.0004 13 7 5.3337 -4.7376 -0.0002 14 14 4.2627 -7.2860 -0.0011 15 1 2.8750 -7.8147 -0.0020 16 1 4.9745 -7.7634 -1.2139 17 1 4.9744 -7.7644 1.2111 18 6 1.8038 -2.5642 0.0006 19 6 2.2114 -1.2150 0.0060 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5138 22 1 -0.3633 -0.8900 0.5139 23 1 1.6482 2.1142 -0.0008 24 1 4.1065 2.1358 0.0001 25 1 5.3749 0.0336 0.0005 26 1 6.1852 -5.2021 0.0000 27 1 0.7854 -2.9237 0.0010 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213973045.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:34 Heat of formation + Delta-G solvation = 23.331556 kcal Electronic energy + Delta-G solvation = -12110.074511 eV Core-core repulsion = 10024.756621 eV Total energy + Delta-G solvation = -2085.317890 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.66629 -36.06034 -33.46913 -31.93743 -28.86693 -28.44596 -26.22605 -24.62675 -20.65415 -20.48718 -18.86638 -17.63222 -15.93684 -15.06772 -14.66143 -13.99263 -13.27777 -13.25702 -12.45488 -12.29475 -12.26063 -11.57682 -11.48857 -11.43278 -11.25623 -10.91706 -10.45260 -10.32362 -10.09786 -9.69361 -9.48932 -8.34546 -7.17971 -7.11041 -6.46175 -4.51575 2.27492 2.82826 2.92156 2.92738 2.99678 3.71436 3.88664 4.88442 5.03069 5.24233 5.83444 5.86856 6.12516 6.23086 6.36743 6.41828 6.59064 6.77823 6.85156 6.92091 7.16763 7.29688 7.45652 7.56896 7.69818 7.78255 7.96604 8.15790 8.45533 8.61287 8.89512 9.47556 9.87350 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.059812 B = 0.009465 C = 0.008208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.021251 B = 2957.442795 C = 3410.318755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.110 4.110 3 C -0.141 4.141 4 C -0.173 4.173 5 C -0.121 4.121 6 C 0.039 3.961 7 N -0.588 5.588 8 H 0.423 0.577 9 C 0.289 3.711 10 C -0.440 4.440 11 H 0.100 0.900 12 C 0.068 3.932 13 N -0.833 5.833 14 Si 0.936 3.064 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.378 4.378 19 C -0.036 4.036 20 H 0.053 0.947 21 H 0.048 0.952 22 H 0.058 0.942 23 H 0.098 0.902 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.291 0.709 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 1.777 0.002 2.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.161 4.161 4 C -0.192 4.192 5 C -0.142 4.142 6 C -0.067 4.067 7 N -0.203 5.203 8 H 0.271 0.729 9 C 0.177 3.823 10 C -0.473 4.473 11 H 0.118 0.882 12 C -0.147 4.147 13 N -0.464 5.464 14 Si 0.760 3.240 15 H -0.180 1.180 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.400 4.400 19 C -0.041 4.041 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.077 0.923 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.850 1.685 0.002 1.888 hybrid contribution 0.678 -0.832 -0.008 1.073 sum -0.172 0.853 -0.005 0.870 Atomic orbital electron populations 1.20510 0.92955 1.01018 1.00651 1.18922 0.94395 0.91819 1.05907 1.20071 0.93868 0.96049 1.06084 1.20238 0.93787 0.95762 1.09448 1.19782 0.97606 0.90392 1.06457 1.18461 0.93881 0.85921 1.08486 1.43144 1.10102 1.02368 1.64660 0.72897 1.18094 0.84313 0.90262 0.89600 1.19139 0.94159 0.89568 1.44459 0.88211 1.26150 0.94507 1.02873 0.91179 1.68754 0.99471 1.38994 1.39164 0.85779 0.79829 0.79732 0.78661 1.18048 1.19646 1.19643 1.20438 0.96139 0.90323 1.33147 1.17977 0.91754 0.93202 1.01158 0.92845 0.93278 0.92310 0.88397 0.88097 0.88461 0.89713 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.92 36.01 0.36 -1.36 15 2 C -0.11 -2.43 5.90 -104.43 -0.62 -3.04 15 3 C -0.14 -2.88 9.61 -39.98 -0.38 -3.27 15 4 C -0.17 -3.53 10.02 -39.42 -0.40 -3.93 15 5 C -0.12 -2.70 10.07 -39.42 -0.40 -3.10 15 6 C 0.04 0.98 7.24 -83.69 -0.61 0.38 15 7 N -0.59 -15.38 5.84 -8.30 -0.05 -15.43 15 8 H 0.42 10.79 6.18 -40.82 -0.25 10.54 15 9 C 0.29 7.77 6.67 -83.97 -0.56 7.21 15 10 C -0.44 -11.22 9.31 -38.22 -0.36 -11.58 15 11 H 0.10 2.40 7.85 -52.49 -0.41 1.99 15 12 C 0.07 1.61 5.50 -17.28 -0.10 1.51 15 13 N -0.83 -19.99 10.61 55.56 0.59 -19.40 15 14 Si 0.94 17.66 29.56 -169.99 -5.03 12.63 15 15 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 16 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 17 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 18 C -0.38 -9.84 10.44 -38.23 -0.40 -10.24 15 19 C -0.04 -0.91 5.97 -106.91 -0.64 -1.55 15 20 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 21 H 0.05 0.77 8.08 -51.93 -0.42 0.35 15 22 H 0.06 1.07 7.81 -51.93 -0.41 0.67 15 23 H 0.10 1.70 8.06 -52.49 -0.42 1.28 15 24 H 0.10 1.74 8.06 -52.48 -0.42 1.32 15 25 H 0.10 1.96 8.06 -52.48 -0.42 1.53 15 26 H 0.29 6.28 8.29 -40.82 -0.34 5.94 15 27 H 0.11 2.76 8.03 -52.49 -0.42 2.34 15 LS Contribution 236.54 15.07 3.56 3.56 Total: -1.00 -27.08 236.54 -7.74 -34.82 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -2.74 Total: 12.77 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: -4.09 Total: -28.97 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.54 Total: -34.82 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.08 -7.74 -34.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213973045.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.154 kcal (2) G-P(sol) polarization free energy of solvation -27.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds