Wall clock time and date at job start Mon Mar 30 2020 02:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81397 * 103.00228 * 2 1 4 4 H 1.09002 * 110.43369 * 305.69935 * 3 2 1 5 5 C 1.54894 * 110.48308 * 68.24091 * 3 2 1 6 6 C 1.55238 * 102.58338 * 156.67670 * 5 3 2 7 7 C 1.54266 * 104.23333 * 322.08174 * 6 5 3 8 8 H 1.09003 * 110.02805 * 142.89578 * 7 6 5 9 9 N 1.46494 * 110.07295 * 264.30293 * 7 6 5 10 10 C 1.36936 * 120.00525 * 272.19043 * 9 7 6 11 11 H 1.08007 * 119.99603 * 0.02562 * 10 9 7 12 12 C 1.38809 * 120.00623 * 180.02562 * 10 9 7 13 13 N 1.31614 * 120.00287 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99673 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47300 * 89.99891 * 14 12 10 16 16 H 1.48500 * 109.47171 * 210.00172 * 14 12 10 17 17 H 1.48503 * 109.47172 * 329.99713 * 14 12 10 18 18 C 1.53869 * 106.59800 * 23.61579 * 7 6 5 19 19 H 1.09004 * 109.46994 * 60.00024 * 1 2 3 20 20 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47287 * 300.00376 * 1 2 3 22 22 H 1.08996 * 110.75388 * 275.06024 * 5 3 2 23 23 H 1.08993 * 110.76071 * 38.44250 * 5 3 2 24 24 H 1.09005 * 110.46917 * 203.39204 * 6 5 3 25 25 H 1.09006 * 110.46947 * 80.77225 * 6 5 3 26 26 H 0.97007 * 119.99871 * 92.19612 * 9 7 6 27 27 H 0.97004 * 120.00194 * 179.97438 * 13 12 10 28 28 H 1.09001 * 110.02983 * 240.71432 * 18 7 6 29 29 H 1.08996 * 110.07773 * 119.30576 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7270 2.2724 -0.8295 5 6 1.8200 2.4166 1.3476 6 6 2.7441 3.6623 1.4121 7 6 4.0814 3.1736 0.8182 8 1 4.5385 3.9662 0.2257 9 7 4.9888 2.7639 1.8928 10 6 5.8104 3.6861 2.4842 11 1 5.7891 4.7157 2.1586 12 6 6.6706 3.2978 3.5020 13 7 7.4599 4.1843 4.0707 14 14 6.7080 1.5169 4.0646 15 1 7.7118 0.7670 3.2676 16 1 7.0746 1.4596 5.5025 17 1 5.3673 0.9084 3.8710 18 6 3.7495 1.9689 -0.0796 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 0.7706 2.7112 1.3365 23 1 2.0239 1.7408 2.1781 24 1 2.8799 3.9831 2.4449 25 1 2.3332 4.4733 0.8106 26 1 5.0078 1.8392 2.1854 27 1 8.0608 3.9129 4.7822 28 1 4.2629 1.0791 0.2847 29 1 4.0457 2.1758 -1.1079 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235087356.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:15 Heat of formation + Delta-G solvation = 0.684249 kcal Electronic energy + Delta-G solvation = -11193.509542 eV Core-core repulsion = 9242.653542 eV Total energy + Delta-G solvation = -1950.855999 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.90909 -33.57848 -30.94924 -29.06988 -28.32916 -26.96345 -22.88684 -20.64359 -19.39655 -17.53107 -16.37197 -15.54629 -14.73159 -14.36429 -13.82325 -13.52699 -13.08325 -12.99426 -12.57668 -12.03210 -11.68163 -11.37575 -10.86660 -10.79061 -10.60620 -10.45131 -10.37365 -9.95468 -9.71441 -9.56207 -8.89450 -7.60169 -7.24001 -5.75446 -3.10622 1.78448 2.65882 3.41141 3.45784 3.48541 4.61903 4.78040 4.89685 5.06518 5.09233 5.24758 5.45687 5.57294 5.60367 5.72629 5.86340 5.91444 5.97449 6.14939 6.21760 6.48445 6.57368 6.76223 6.96278 8.02124 8.44223 9.23154 9.96013 10.16086 11.42888 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.049499 B = 0.009347 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.526841 B = 2995.016510 C = 3285.413444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.271 6.271 3 C -0.052 4.052 4 H 0.086 0.914 5 C -0.114 4.114 6 C -0.144 4.144 7 C 0.183 3.817 8 H 0.061 0.939 9 N -0.744 5.744 10 C -0.244 4.244 11 H 0.090 0.910 12 C 0.005 3.995 13 N -0.935 5.935 14 Si 0.881 3.119 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.275 1.275 18 C -0.110 4.110 19 H 0.072 0.928 20 H 0.095 0.905 21 H 0.075 0.925 22 H 0.056 0.944 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.054 0.946 26 H 0.362 0.638 27 H 0.259 0.741 28 H 0.075 0.925 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.531 -6.063 -8.338 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.043 6.043 3 C -0.181 4.181 4 H 0.105 0.895 5 C -0.153 4.153 6 C -0.185 4.185 7 C 0.072 3.928 8 H 0.079 0.921 9 N -0.387 5.387 10 C -0.374 4.374 11 H 0.108 0.892 12 C -0.190 4.190 13 N -0.582 5.582 14 Si 0.712 3.288 15 H -0.210 1.210 16 H -0.218 1.218 17 H -0.201 1.201 18 C -0.149 4.149 19 H 0.091 0.909 20 H 0.114 0.886 21 H 0.094 0.906 22 H 0.075 0.925 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.073 0.927 26 H 0.195 0.805 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.727 -6.767 -8.297 16.631 hybrid contribution -0.815 -0.252 0.505 0.991 sum -13.541 -7.019 -7.792 17.127 Atomic orbital electron populations 1.23318 0.95112 1.05897 1.04652 1.86905 1.06554 1.12924 1.97904 1.24100 1.00949 0.91760 1.01295 0.89541 1.22859 0.98678 0.98351 0.95419 1.23187 0.96919 0.95686 1.02747 1.20757 0.89627 0.93615 0.88772 0.92068 1.42912 1.45782 1.08521 1.41464 1.19095 1.12844 0.92171 1.13307 0.89179 1.24654 0.98610 0.97072 0.98694 1.69701 1.27416 1.32782 1.28337 0.86587 0.77817 0.86373 0.78067 1.21047 1.21768 1.20105 1.22383 0.91238 1.00366 1.00952 0.90897 0.88621 0.90596 0.92487 0.90426 0.90262 0.92699 0.80504 0.93081 0.90609 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 10.67 101.05 1.08 -0.14 15 2 S -0.27 -3.77 21.64 -107.50 -2.33 -6.10 15 3 C -0.05 -0.73 3.36 -25.07 -0.08 -0.82 15 4 H 0.09 1.08 8.14 -51.93 -0.42 0.65 15 5 C -0.11 -1.67 6.28 -24.55 -0.15 -1.83 15 6 C -0.14 -2.43 6.55 -24.88 -0.16 -2.59 15 7 C 0.18 3.49 3.55 -66.82 -0.24 3.25 15 8 H 0.06 1.19 8.09 -51.93 -0.42 0.77 15 9 N -0.74 -17.64 4.88 -52.35 -0.26 -17.89 15 10 C -0.24 -6.88 10.44 -15.06 -0.16 -7.03 15 11 H 0.09 2.70 8.06 -52.48 -0.42 2.28 15 12 C 0.01 0.16 5.50 -17.43 -0.10 0.06 15 13 N -0.93 -29.48 13.97 55.49 0.78 -28.70 15 14 Si 0.88 22.43 27.74 -169.99 -4.71 17.71 15 15 H -0.28 -7.19 7.11 56.52 0.40 -6.79 15 16 H -0.29 -7.50 7.11 56.52 0.40 -7.09 15 17 H -0.28 -6.67 6.52 56.52 0.37 -6.30 15 18 C -0.11 -1.77 6.16 -25.62 -0.16 -1.93 15 19 H 0.07 0.64 8.14 -51.92 -0.42 0.22 15 20 H 0.10 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.07 0.73 8.14 -51.92 -0.42 0.31 15 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.08 1.27 8.06 -51.93 -0.42 0.85 15 24 H 0.08 1.54 8.04 -51.93 -0.42 1.12 15 25 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 26 H 0.36 8.60 5.38 -40.82 -0.22 8.38 15 27 H 0.26 7.80 8.31 -40.82 -0.34 7.46 15 28 H 0.08 1.34 7.27 -51.93 -0.38 0.96 15 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 251.66 15.07 3.79 3.79 Total: -1.00 -30.57 251.66 -7.10 -37.67 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.40 Total: 4.54 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 0.03 Total: -11.02 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.52 Total: -46.60 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.71 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -2.33 Total: -6.10 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.57 -7.10 -37.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235087356.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.357 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds