Wall clock time and date at job start Mon Mar 30 2020 02:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81397 * 103.00228 * 2 1 4 4 H 1.09002 * 110.43369 * 305.69935 * 3 2 1 5 5 C 1.54894 * 110.48308 * 68.24091 * 3 2 1 6 6 C 1.55238 * 102.58338 * 156.67670 * 5 3 2 7 7 C 1.54266 * 104.23333 * 322.08174 * 6 5 3 8 8 H 1.09003 * 110.02805 * 142.89578 * 7 6 5 9 9 N 1.46494 * 110.07295 * 264.30293 * 7 6 5 10 10 C 1.36936 * 120.00525 * 272.19043 * 9 7 6 11 11 H 1.08007 * 119.99603 * 0.02562 * 10 9 7 12 12 C 1.38809 * 120.00623 * 180.02562 * 10 9 7 13 13 N 1.31614 * 120.00287 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99673 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47300 * 89.99891 * 14 12 10 16 16 H 1.48500 * 109.47171 * 210.00172 * 14 12 10 17 17 H 1.48503 * 109.47172 * 329.99713 * 14 12 10 18 18 C 1.53869 * 106.59800 * 23.61579 * 7 6 5 19 19 H 1.09004 * 109.46994 * 60.00024 * 1 2 3 20 20 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47287 * 300.00376 * 1 2 3 22 22 H 1.08996 * 110.75388 * 275.06024 * 5 3 2 23 23 H 1.08993 * 110.76071 * 38.44250 * 5 3 2 24 24 H 1.09005 * 110.46917 * 203.39204 * 6 5 3 25 25 H 1.09006 * 110.46947 * 80.77225 * 6 5 3 26 26 H 0.97007 * 119.99871 * 92.19612 * 9 7 6 27 27 H 0.97004 * 120.00194 * 179.97438 * 13 12 10 28 28 H 1.09001 * 110.02983 * 240.71432 * 18 7 6 29 29 H 1.08996 * 110.07773 * 119.30576 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7270 2.2724 -0.8295 5 6 1.8200 2.4166 1.3476 6 6 2.7441 3.6623 1.4121 7 6 4.0814 3.1736 0.8182 8 1 4.5385 3.9662 0.2257 9 7 4.9888 2.7639 1.8928 10 6 5.8104 3.6861 2.4842 11 1 5.7891 4.7157 2.1586 12 6 6.6706 3.2978 3.5020 13 7 7.4599 4.1843 4.0707 14 14 6.7080 1.5169 4.0646 15 1 7.7118 0.7670 3.2676 16 1 7.0746 1.4596 5.5025 17 1 5.3673 0.9084 3.8710 18 6 3.7495 1.9689 -0.0796 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 0.7706 2.7112 1.3365 23 1 2.0239 1.7408 2.1781 24 1 2.8799 3.9831 2.4449 25 1 2.3332 4.4733 0.8106 26 1 5.0078 1.8392 2.1854 27 1 8.0608 3.9129 4.7822 28 1 4.2629 1.0791 0.2847 29 1 4.0457 2.1758 -1.1079 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235087356.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:15 Heat of formation + Delta-G solvation = -18.626159 kcal Electronic energy + Delta-G solvation = -11194.346904 eV Core-core repulsion = 9242.653542 eV Total energy + Delta-G solvation = -1951.693362 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.33885 -35.50647 -32.97590 -29.99291 -29.55927 -28.48179 -24.90696 -21.89414 -20.96635 -19.59296 -17.59087 -16.86475 -16.36550 -16.06732 -15.07231 -14.82279 -14.49729 -14.19053 -13.97261 -13.78680 -13.12875 -12.80695 -12.59409 -12.27153 -12.09564 -12.01105 -11.84590 -11.73633 -11.51205 -10.96384 -10.73629 -9.29186 -8.64832 -8.02363 -5.34464 0.79724 1.38236 1.39403 1.46997 1.70795 2.48122 3.27484 3.52971 3.64096 3.84080 4.08024 4.37133 4.39333 4.50348 4.55934 4.57659 4.63940 4.81738 4.89949 4.94695 5.10603 5.27587 5.35262 5.50101 5.79830 6.22857 7.08721 7.86753 8.04292 9.19366 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.049499 B = 0.009347 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.526841 B = 2995.016510 C = 3285.413444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.318 6.318 3 C -0.039 4.039 4 H 0.111 0.889 5 C -0.105 4.105 6 C -0.138 4.138 7 C 0.170 3.830 8 H 0.052 0.948 9 N -0.748 5.748 10 C -0.227 4.227 11 H 0.060 0.940 12 C -0.062 4.062 13 N -0.984 5.984 14 Si 0.949 3.051 15 H -0.279 1.279 16 H -0.295 1.295 17 H -0.256 1.256 18 C -0.104 4.104 19 H 0.089 0.911 20 H 0.109 0.891 21 H 0.082 0.918 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.363 0.637 27 H 0.257 0.743 28 H 0.059 0.941 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.810 -7.487 -9.507 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.090 6.090 3 C -0.168 4.168 4 H 0.130 0.870 5 C -0.144 4.144 6 C -0.180 4.180 7 C 0.061 3.939 8 H 0.071 0.929 9 N -0.392 5.392 10 C -0.358 4.358 11 H 0.078 0.922 12 C -0.253 4.253 13 N -0.635 5.635 14 Si 0.777 3.223 15 H -0.206 1.206 16 H -0.222 1.222 17 H -0.181 1.181 18 C -0.143 4.143 19 H 0.108 0.892 20 H 0.128 0.872 21 H 0.101 0.899 22 H 0.105 0.895 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.196 0.804 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.056 -8.201 -9.510 19.606 hybrid contribution -0.184 0.257 0.784 0.845 sum -15.241 -7.945 -8.726 19.276 Atomic orbital electron populations 1.23392 0.91104 1.07250 1.05835 1.87107 1.10976 1.12902 1.98015 1.23965 0.99221 0.92043 1.01546 0.87035 1.22782 0.99758 0.96611 0.95277 1.23028 0.96280 0.97615 1.01030 1.21061 0.89744 0.94999 0.88064 0.92943 1.42943 1.46113 1.07733 1.42388 1.19074 1.12520 0.91679 1.12526 0.92210 1.25416 0.98938 1.01496 0.99487 1.69870 1.28984 1.35127 1.29532 0.85490 0.78624 0.81118 0.77065 1.20568 1.22196 1.18134 1.22254 0.93102 0.98009 1.00930 0.89159 0.87240 0.89917 0.89538 0.92342 0.93340 0.90191 0.80412 0.93400 0.92202 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.67 113.37 1.21 -0.52 15 2 S -0.32 -7.95 21.64 -56.49 -1.22 -9.18 15 3 C -0.04 -0.97 3.36 31.67 0.11 -0.86 15 4 H 0.11 2.26 8.14 -2.39 -0.02 2.24 15 5 C -0.10 -2.79 6.28 32.01 0.20 -2.59 15 6 C -0.14 -4.45 6.55 31.79 0.21 -4.24 15 7 C 0.17 6.33 3.55 45.71 0.16 6.49 15 8 H 0.05 2.02 8.09 -2.39 -0.02 2.00 15 9 N -0.75 -35.36 4.88 -319.53 -1.56 -36.92 15 10 C -0.23 -13.03 10.44 84.03 0.88 -12.16 15 11 H 0.06 3.73 8.06 -2.91 -0.02 3.71 15 12 C -0.06 -3.71 5.50 84.86 0.47 -3.24 15 13 N -0.98 -63.85 13.97 21.65 0.30 -63.54 15 14 Si 0.95 46.82 27.74 68.60 1.90 48.72 15 15 H -0.28 -13.49 7.11 99.48 0.71 -12.78 15 16 H -0.30 -14.67 7.11 99.48 0.71 -13.96 15 17 H -0.26 -11.70 6.52 99.48 0.65 -11.05 15 18 C -0.10 -3.13 6.16 31.32 0.19 -2.94 15 19 H 0.09 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.08 1.25 8.14 -2.39 -0.02 1.23 15 22 H 0.09 1.82 8.14 -2.39 -0.02 1.80 15 23 H 0.06 1.79 8.06 -2.39 -0.02 1.78 15 24 H 0.05 1.86 8.04 -2.38 -0.02 1.84 15 25 H 0.08 2.17 8.14 -2.38 -0.02 2.16 15 26 H 0.36 16.91 5.38 -92.70 -0.50 16.42 15 27 H 0.26 15.91 8.31 -92.71 -0.77 15.14 15 28 H 0.06 2.03 7.27 -2.39 -0.02 2.01 15 29 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 Total: -1.00 -66.89 251.66 3.41 -63.48 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.56 Total: 17.50 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 3.42 Total: -20.06 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -1.26 Total: -100.46 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.90 Total: 48.72 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.22 Total: -9.18 kcal Total: -66.89 3.41 -63.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235087356.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.853 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds