Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81393 * 102.99905 * 2 1 4 4 H 1.09008 * 110.05668 * 53.58283 * 3 2 1 5 5 C 1.54087 * 110.16313 * 292.11497 * 3 2 1 6 6 C 1.54259 * 106.62221 * 240.87849 * 5 3 2 7 7 C 1.54886 * 104.19753 * 336.27847 * 6 5 3 8 8 C 1.54262 * 110.03448 * 174.99989 * 3 2 1 9 9 H 1.08997 * 110.48620 * 24.08571 * 8 3 2 10 10 N 1.46506 * 110.48826 * 261.57397 * 8 3 2 11 11 C 1.36939 * 120.00073 * 156.56245 * 10 8 3 12 12 H 1.08004 * 119.99859 * 0.02562 * 11 10 8 13 13 C 1.38805 * 119.99849 * 180.02562 * 11 10 8 14 14 N 1.31622 * 120.00455 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00168 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46615 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47374 * 119.99782 * 15 13 11 18 18 H 1.48495 * 109.47187 * 240.00172 * 15 13 11 19 19 H 1.08988 * 109.47188 * 299.99746 * 1 2 3 20 20 H 1.09001 * 109.47147 * 60.00096 * 1 2 3 21 21 H 1.09002 * 109.46735 * 179.97438 * 1 2 3 22 22 H 1.09007 * 110.11451 * 121.53690 * 5 3 2 23 23 H 1.08999 * 109.97080 * 0.14326 * 5 3 2 24 24 H 1.09005 * 110.49000 * 217.60023 * 6 5 3 25 25 H 1.08998 * 110.60122 * 95.01542 * 6 5 3 26 26 H 1.09002 * 110.75858 * 279.62788 * 7 6 5 27 27 H 1.08999 * 110.91517 * 156.33002 * 7 6 5 28 28 H 0.97005 * 119.99811 * 336.84038 * 10 8 3 29 29 H 0.97000 * 120.00679 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7138 2.2684 0.8240 5 6 1.8109 2.4075 -1.3400 6 6 3.1017 2.9586 -1.9802 7 6 4.0585 3.1736 -0.7813 8 6 3.7477 1.9576 0.1263 9 1 4.2733 1.0717 -0.2297 10 7 4.1152 2.2470 1.5147 11 6 5.3844 1.9835 1.9562 12 1 6.1146 1.5628 1.2808 13 6 5.7323 2.2572 3.2718 14 7 4.8426 2.7704 4.0948 15 14 7.4639 1.8985 3.8739 16 1 8.2665 1.3289 2.7619 17 1 8.0945 3.1573 4.3460 18 1 7.4069 0.9236 4.9925 19 1 -0.3633 0.5137 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.1041 3.2190 -1.1666 23 1 1.3635 1.6555 -1.9900 24 1 2.9036 3.9044 -2.4846 25 1 3.5222 2.2355 -2.6790 26 1 3.8302 4.1075 -0.2675 27 1 5.0988 3.1574 -1.1060 28 1 3.4582 2.6215 2.1223 29 1 5.0856 2.9613 5.0143 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235270304.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = -3.458225 kcal Electronic energy + Delta-G solvation = -11209.789295 eV Core-core repulsion = 9258.753664 eV Total energy + Delta-G solvation = -1951.035631 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.71094 -33.60182 -30.62200 -29.07037 -27.94370 -26.56081 -23.17239 -20.16031 -19.73630 -17.37843 -15.93881 -15.45403 -14.47572 -14.11975 -13.45998 -13.33692 -13.19548 -13.01654 -12.65825 -11.88405 -11.28872 -11.08041 -10.78754 -10.72091 -10.64095 -10.48357 -10.18258 -9.96012 -9.65761 -9.39648 -8.86470 -7.24256 -6.93558 -5.74356 -3.03100 2.08976 2.98698 3.45897 3.51646 3.53808 4.60911 4.95878 5.02660 5.25656 5.32153 5.35855 5.61462 5.80046 5.82457 5.83308 5.95387 6.01545 6.08915 6.16356 6.39687 6.47306 6.59154 6.78131 7.02702 7.73708 8.43449 9.55048 10.10588 10.45742 11.48482 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.040932 B = 0.009841 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.893178 B = 2844.519095 C = 3229.477950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.253 6.253 3 C -0.060 4.060 4 H 0.087 0.913 5 C -0.116 4.116 6 C -0.121 4.121 7 C -0.138 4.138 8 C 0.198 3.802 9 H 0.062 0.938 10 N -0.716 5.716 11 C -0.236 4.236 12 H 0.071 0.929 13 C -0.013 4.013 14 N -0.933 5.933 15 Si 0.907 3.093 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.291 1.291 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.093 0.907 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.384 0.616 29 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 -1.420 -10.435 12.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.025 6.025 3 C -0.190 4.190 4 H 0.105 0.895 5 C -0.156 4.156 6 C -0.159 4.159 7 C -0.180 4.180 8 C 0.086 3.914 9 H 0.080 0.920 10 N -0.356 5.356 11 C -0.368 4.368 12 H 0.089 0.911 13 C -0.209 4.209 14 N -0.582 5.582 15 Si 0.738 3.262 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.219 1.219 19 H 0.091 0.909 20 H 0.089 0.911 21 H 0.112 0.888 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.218 0.782 29 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.622 -2.393 -10.357 12.524 hybrid contribution -0.219 0.994 0.701 1.236 sum -6.841 -1.399 -9.657 11.917 Atomic orbital electron populations 1.23353 0.96294 1.05618 1.04350 1.86980 1.05105 1.12741 1.97704 1.24262 1.02659 0.92132 0.99988 0.89465 1.22528 0.98244 0.99720 0.95134 1.22281 0.95600 0.99993 0.98072 1.23179 0.98530 1.00659 0.95614 1.20822 0.88049 0.95316 0.87189 0.92015 1.42398 1.11980 1.75576 1.05680 1.19283 0.88334 1.34724 0.94412 0.91074 1.24728 0.97925 1.01873 0.96332 1.69672 1.33336 1.49811 1.05361 0.86117 0.84171 0.77380 0.78550 1.20511 1.21918 1.21861 0.90872 0.91148 0.88814 0.91950 0.91398 0.92309 0.91829 0.91444 0.91836 0.78207 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.61 10.65 101.05 1.08 -0.53 15 2 S -0.25 -4.34 21.34 -107.50 -2.29 -6.63 15 3 C -0.06 -1.06 3.15 -25.50 -0.08 -1.14 15 4 H 0.09 1.61 7.72 -51.92 -0.40 1.21 15 5 C -0.12 -1.64 6.38 -25.50 -0.16 -1.81 15 6 C -0.12 -1.72 6.83 -25.08 -0.17 -1.89 15 7 C -0.14 -2.47 6.58 -24.74 -0.16 -2.63 15 8 C 0.20 4.09 3.05 -66.27 -0.20 3.88 15 9 H 0.06 1.36 7.77 -51.93 -0.40 0.95 15 10 N -0.72 -18.29 5.22 -51.82 -0.27 -18.56 15 11 C -0.24 -6.67 9.96 -15.06 -0.15 -6.82 15 12 H 0.07 1.96 7.83 -52.48 -0.41 1.55 15 13 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 15 14 N -0.93 -28.52 13.06 55.49 0.72 -27.79 15 15 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 15 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 15 18 H -0.29 -7.36 7.11 56.52 0.40 -6.96 15 19 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 20 H 0.07 0.77 7.93 -51.92 -0.41 0.36 15 21 H 0.09 1.03 8.14 -51.92 -0.42 0.61 15 22 H 0.06 0.81 8.14 -51.92 -0.42 0.38 15 23 H 0.07 0.89 7.39 -51.93 -0.38 0.51 15 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.38 10.39 7.54 -40.82 -0.31 10.09 15 29 H 0.25 7.50 8.31 -40.82 -0.34 7.16 15 LS Contribution 254.08 15.07 3.83 3.83 Total: -1.00 -30.10 254.08 -7.40 -37.50 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.41 Total: 5.36 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 0.05 Total: -11.40 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.45 Total: -46.35 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: -4.34 SS G_CDS: -2.29 Total: -6.63 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.10 -7.40 -37.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235270304.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.038 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds