Wall clock time and date at job start Mon Mar 30 2020 02:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81393 * 102.99905 * 2 1 4 4 H 1.09008 * 110.05668 * 53.58283 * 3 2 1 5 5 C 1.54087 * 110.16313 * 292.11497 * 3 2 1 6 6 C 1.54259 * 106.62221 * 240.87849 * 5 3 2 7 7 C 1.54886 * 104.19753 * 336.27847 * 6 5 3 8 8 C 1.54262 * 110.03448 * 174.99989 * 3 2 1 9 9 H 1.08997 * 110.48620 * 24.08571 * 8 3 2 10 10 N 1.46506 * 110.48826 * 261.57397 * 8 3 2 11 11 C 1.36939 * 120.00073 * 156.56245 * 10 8 3 12 12 H 1.08004 * 119.99859 * 0.02562 * 11 10 8 13 13 C 1.38805 * 119.99849 * 180.02562 * 11 10 8 14 14 N 1.31622 * 120.00455 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00168 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46615 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47374 * 119.99782 * 15 13 11 18 18 H 1.48495 * 109.47187 * 240.00172 * 15 13 11 19 19 H 1.08988 * 109.47188 * 299.99746 * 1 2 3 20 20 H 1.09001 * 109.47147 * 60.00096 * 1 2 3 21 21 H 1.09002 * 109.46735 * 179.97438 * 1 2 3 22 22 H 1.09007 * 110.11451 * 121.53690 * 5 3 2 23 23 H 1.08999 * 109.97080 * 0.14326 * 5 3 2 24 24 H 1.09005 * 110.49000 * 217.60023 * 6 5 3 25 25 H 1.08998 * 110.60122 * 95.01542 * 6 5 3 26 26 H 1.09002 * 110.75858 * 279.62788 * 7 6 5 27 27 H 1.08999 * 110.91517 * 156.33002 * 7 6 5 28 28 H 0.97005 * 119.99811 * 336.84038 * 10 8 3 29 29 H 0.97000 * 120.00679 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7674 0.0000 4 1 1.7138 2.2684 0.8240 5 6 1.8109 2.4075 -1.3400 6 6 3.1017 2.9586 -1.9802 7 6 4.0585 3.1736 -0.7813 8 6 3.7477 1.9576 0.1263 9 1 4.2733 1.0717 -0.2297 10 7 4.1152 2.2470 1.5147 11 6 5.3844 1.9835 1.9562 12 1 6.1146 1.5628 1.2808 13 6 5.7323 2.2572 3.2718 14 7 4.8426 2.7704 4.0948 15 14 7.4639 1.8985 3.8739 16 1 8.2665 1.3289 2.7619 17 1 8.0945 3.1573 4.3460 18 1 7.4069 0.9236 4.9925 19 1 -0.3633 0.5137 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.1041 3.2190 -1.1666 23 1 1.3635 1.6555 -1.9900 24 1 2.9036 3.9044 -2.4846 25 1 3.5222 2.2355 -2.6790 26 1 3.8302 4.1075 -0.2675 27 1 5.0988 3.1574 -1.1060 28 1 3.4582 2.6215 2.1223 29 1 5.0856 2.9613 5.0143 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235270304.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:05 Heat of formation + Delta-G solvation = -22.107619 kcal Electronic energy + Delta-G solvation = -11210.597993 eV Core-core repulsion = 9258.753664 eV Total energy + Delta-G solvation = -1951.844329 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.18650 -35.54651 -32.58425 -30.24251 -29.17859 -28.23307 -25.19442 -21.40243 -21.32898 -19.37150 -17.44376 -17.13188 -15.97747 -15.77853 -15.15701 -14.77869 -14.52925 -14.23661 -13.90728 -13.59130 -12.96946 -12.72359 -12.53610 -12.27344 -12.13174 -11.92206 -11.86888 -11.67531 -11.49043 -10.92951 -10.66318 -9.01302 -8.58621 -7.95490 -5.24005 0.83622 1.46269 1.47446 1.57390 1.76117 2.55391 3.37056 3.60646 3.66316 4.07325 4.21584 4.35702 4.39818 4.49180 4.58016 4.60680 4.70018 4.82448 4.90543 5.07052 5.16802 5.29072 5.33995 5.47644 5.55026 6.26283 7.32368 8.05756 8.30194 9.28377 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.040932 B = 0.009841 C = 0.008668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.893178 B = 2844.519095 C = 3229.477950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.313 6.313 3 C -0.050 4.050 4 H 0.072 0.928 5 C -0.107 4.107 6 C -0.109 4.109 7 C -0.134 4.134 8 C 0.188 3.812 9 H 0.045 0.955 10 N -0.729 5.729 11 C -0.238 4.238 12 H 0.072 0.928 13 C -0.074 4.074 14 N -0.970 5.970 15 Si 0.972 3.028 16 H -0.267 1.267 17 H -0.291 1.291 18 H -0.294 1.294 19 H 0.073 0.927 20 H 0.093 0.907 21 H 0.111 0.889 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.372 0.628 29 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 -1.485 -12.099 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.085 6.085 3 C -0.180 4.180 4 H 0.090 0.910 5 C -0.147 4.147 6 C -0.148 4.148 7 C -0.176 4.176 8 C 0.078 3.922 9 H 0.062 0.938 10 N -0.368 5.368 11 C -0.370 4.370 12 H 0.090 0.910 13 C -0.266 4.266 14 N -0.621 5.621 15 Si 0.801 3.199 16 H -0.191 1.191 17 H -0.218 1.218 18 H -0.221 1.221 19 H 0.092 0.908 20 H 0.112 0.888 21 H 0.130 0.870 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.104 0.896 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.204 0.796 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.350 -2.466 -12.081 14.355 hybrid contribution -0.063 0.967 1.171 1.520 sum -7.413 -1.499 -10.910 13.275 Atomic orbital electron populations 1.23404 0.91534 1.07228 1.05561 1.87138 1.10367 1.13144 1.97891 1.24087 0.99946 0.92265 1.01657 0.90996 1.22510 0.98594 1.00475 0.93094 1.22246 0.94286 1.01710 0.96526 1.23028 0.99385 0.98518 0.96644 1.21053 0.90376 0.95697 0.85057 0.93751 1.42546 1.10939 1.75777 1.07585 1.19617 0.89453 1.33353 0.94548 0.90982 1.25524 1.01761 1.02669 0.96668 1.69820 1.35244 1.51614 1.05420 0.85092 0.79887 0.76942 0.77977 1.19141 1.21821 1.22120 0.90759 0.88782 0.86993 0.90058 0.89595 0.89625 0.90797 0.92665 0.92453 0.79581 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 10.65 113.37 1.21 -1.24 15 2 S -0.31 -10.42 21.34 -56.49 -1.21 -11.63 15 3 C -0.05 -1.70 3.15 31.39 0.10 -1.60 15 4 H 0.07 2.65 7.72 -2.38 -0.02 2.63 15 5 C -0.11 -2.70 6.38 31.39 0.20 -2.50 15 6 C -0.11 -2.78 6.83 31.67 0.22 -2.56 15 7 C -0.13 -4.70 6.58 31.88 0.21 -4.49 15 8 C 0.19 7.79 3.05 46.06 0.14 7.93 15 9 H 0.04 1.99 7.77 -2.39 -0.02 1.97 15 10 N -0.73 -38.11 5.22 -317.86 -1.66 -39.76 15 11 C -0.24 -13.64 9.96 84.03 0.84 -12.81 15 12 H 0.07 4.02 7.83 -2.91 -0.02 4.00 15 13 C -0.07 -4.36 5.50 84.86 0.47 -3.89 15 14 N -0.97 -60.60 13.06 21.65 0.28 -60.31 15 15 Si 0.97 47.28 29.55 68.60 2.03 49.31 15 16 H -0.27 -12.25 7.11 99.48 0.71 -11.55 15 17 H -0.29 -14.02 7.11 99.48 0.71 -13.31 15 18 H -0.29 -14.31 7.11 99.48 0.71 -13.61 15 19 H 0.07 1.68 8.14 -2.40 -0.02 1.66 15 20 H 0.09 1.70 7.93 -2.39 -0.02 1.68 15 21 H 0.11 2.13 8.14 -2.39 -0.02 2.11 15 22 H 0.08 1.79 8.14 -2.38 -0.02 1.77 15 23 H 0.09 1.91 7.39 -2.39 -0.02 1.89 15 24 H 0.09 1.78 8.14 -2.38 -0.02 1.77 15 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 28 H 0.37 20.83 7.54 -92.70 -0.70 20.13 15 29 H 0.25 15.13 8.31 -92.71 -0.77 14.36 15 Total: -1.00 -65.51 254.08 3.24 -62.27 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.42 Total: 21.29 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 3.38 Total: -21.17 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -1.38 Total: -100.08 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Atomic # 16 Polarization: -10.42 SS G_CDS: -1.21 Total: -11.63 kcal Total: -65.51 3.24 -62.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235270304.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.164 kcal (2) G-P(sol) polarization free energy of solvation -65.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds