Wall clock time and date at job start Mon Mar 30 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39538 * 120.14278 * 97.60546 * 3 2 1 5 5 C 1.37973 * 119.85786 * 179.97438 * 4 3 2 6 6 C 1.38347 * 120.14046 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.85524 * 180.02562 * 6 5 4 8 8 H 1.09004 * 109.46991 * 19.99986 * 7 6 5 9 9 N 1.46892 * 109.47118 * 139.99949 * 7 6 5 10 10 C 1.50697 * 109.47116 * 260.00363 * 7 6 5 11 11 H 1.08006 * 119.99878 * 335.37333 * 10 7 6 12 12 C 1.37875 * 120.00049 * 155.37502 * 10 7 6 13 13 N 1.31517 * 120.00069 * 355.52167 * 12 10 7 14 14 Si 1.86805 * 120.00030 * 175.24215 * 12 10 7 15 15 H 1.48496 * 109.47103 * 89.99787 * 14 12 10 16 16 H 1.48496 * 109.46991 * 210.00044 * 14 12 10 17 17 H 1.48509 * 109.46900 * 329.99984 * 14 12 10 18 18 C 1.38341 * 120.28732 * 0.27928 * 6 5 4 19 19 C 1.37974 * 120.14214 * 359.44497 * 18 6 5 20 20 H 4.52071 * 14.02035 * 0.02562 * 4 2 1 21 21 H 1.08002 * 120.06713 * 359.95447 * 4 3 2 22 22 H 1.08001 * 119.92578 * 180.02562 * 5 4 3 23 23 H 1.00908 * 111.00094 * 55.58241 * 9 7 6 24 24 H 1.00898 * 111.00148 * 179.53662 * 9 7 6 25 25 H 0.96997 * 119.99635 * 4.93211 * 13 12 10 26 26 H 1.08004 * 119.92786 * 179.73038 * 18 6 5 27 27 H 1.08003 * 120.07436 * 180.27998 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3066 0.1607 -1.1961 5 6 4.6863 0.1609 -1.1892 6 6 5.3750 0.0035 0.0002 7 6 6.8821 0.0053 0.0004 8 1 7.2449 0.4815 -0.9105 9 7 7.3707 0.7484 1.1695 10 6 7.3861 -1.4136 0.0603 11 1 6.7654 -2.1898 0.4831 12 6 8.6397 -1.7210 -0.4245 13 7 9.3602 -0.7950 -1.0186 14 14 9.3179 -3.4507 -0.2304 15 1 8.9338 -4.2681 -1.4092 16 1 10.7983 -3.3934 -0.1289 17 1 8.7607 -4.0656 1.0012 18 6 4.6864 -0.1609 1.1888 19 6 3.3067 -0.1573 1.1963 20 1 -1.0501 0.0005 0.0002 21 1 2.7699 0.2837 -2.1252 22 1 5.2296 0.2851 -2.1143 23 1 6.9896 0.3699 2.0237 24 1 8.3793 0.7576 1.1964 25 1 9.0410 0.1203 -1.0526 26 1 5.2300 -0.2877 2.1134 27 1 2.7702 -0.2811 2.1255 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238618300.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:10 Heat of formation + Delta-G solvation = 64.492656 kcal Electronic energy + Delta-G solvation = -11797.062964 eV Core-core repulsion = 9713.529953 eV Total energy + Delta-G solvation = -2083.533011 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90389 -35.33909 -33.16231 -31.43990 -30.47700 -29.14117 -25.61775 -23.43792 -22.09882 -20.62982 -18.58780 -17.08076 -15.99019 -15.17363 -14.57347 -14.04693 -13.85015 -13.29090 -12.93838 -12.63434 -12.49097 -12.19574 -11.41310 -10.94587 -10.78412 -10.70720 -10.25462 -10.14470 -9.79560 -9.59397 -8.60967 -8.45218 -7.96289 -7.30788 -6.50705 -4.31404 1.45643 1.92977 2.92239 3.34251 3.34786 3.40300 3.53039 4.36523 4.49303 4.51625 5.17919 5.39172 5.39671 5.64036 5.85287 6.00592 6.05241 6.28586 6.44712 6.55512 6.85110 6.90804 6.98700 7.38855 7.54319 7.71159 7.84780 8.17029 8.39861 8.61023 8.65022 9.41675 10.81963 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.050858 B = 0.008104 C = 0.007811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.423915 B = 3454.266475 C = 3583.658028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.120 4.120 3 C -0.037 4.037 4 C -0.091 4.091 5 C -0.126 4.126 6 C -0.002 4.002 7 C 0.216 3.784 8 H 0.055 0.945 9 N -0.852 5.852 10 C -0.625 4.625 11 H 0.051 0.949 12 C 0.029 3.971 13 N -0.904 5.904 14 Si 1.071 2.929 15 H -0.286 1.286 16 H -0.283 1.283 17 H -0.288 1.288 18 C -0.118 4.118 19 C -0.093 4.093 20 H 0.220 0.780 21 H 0.117 0.883 22 H 0.122 0.878 23 H 0.319 0.681 24 H 0.334 0.666 25 H 0.273 0.727 26 H 0.122 0.878 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.164 0.766 2.305 10.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.120 4.120 3 C -0.037 4.037 4 C -0.109 4.109 5 C -0.144 4.144 6 C -0.003 4.003 7 C 0.107 3.893 8 H 0.073 0.927 9 N -0.380 5.380 10 C -0.665 4.665 11 H 0.070 0.930 12 C -0.178 4.178 13 N -0.540 5.540 14 Si 0.898 3.102 15 H -0.213 1.213 16 H -0.209 1.209 17 H -0.214 1.214 18 C -0.136 4.136 19 C -0.111 4.111 20 H 0.236 0.764 21 H 0.135 0.865 22 H 0.140 0.860 23 H 0.130 0.870 24 H 0.145 0.855 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.230 0.454 1.583 9.376 hybrid contribution -1.126 -0.079 0.604 1.280 sum -10.357 0.375 2.187 10.592 Atomic orbital electron populations 1.24690 0.95616 1.02422 1.00837 1.20285 0.92144 0.99586 0.99973 1.15818 0.86015 1.07523 0.94365 1.21035 0.94082 0.99428 0.96370 1.20940 0.93182 1.01878 0.98421 1.20456 0.97633 0.90115 0.92099 1.18293 0.85986 0.93244 0.91798 0.92680 1.59653 1.13218 1.59452 1.05675 1.22550 1.03329 0.94474 1.46099 0.93018 1.25917 0.93903 1.05780 0.92179 1.70795 1.40965 1.03521 1.38673 0.83519 0.76197 0.74034 0.76409 1.21264 1.20868 1.21392 1.20837 0.92888 1.01297 0.98581 1.21062 0.94204 0.99488 0.96342 0.76360 0.86485 0.86006 0.86968 0.85495 0.91584 0.86041 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.84 19.25 29.55 0.57 -2.27 15 2 C -0.12 -1.92 13.24 -38.84 -0.51 -2.43 15 3 C -0.04 -0.66 5.72 -107.00 -0.61 -1.27 15 4 C -0.09 -1.62 9.75 -39.19 -0.38 -2.00 15 5 C -0.13 -2.50 9.65 -39.64 -0.38 -2.88 15 6 C 0.00 -0.05 4.94 -104.54 -0.52 -0.57 15 7 C 0.22 5.20 2.70 -70.02 -0.19 5.01 15 8 H 0.06 1.45 6.54 -51.93 -0.34 1.11 15 9 N -0.85 -18.79 9.12 -6.65 -0.06 -18.86 15 10 C -0.62 -16.59 8.57 -34.44 -0.30 -16.89 15 11 H 0.05 1.41 7.81 -52.48 -0.41 1.00 15 12 C 0.03 0.77 5.46 -17.82 -0.10 0.68 15 13 N -0.90 -25.75 13.63 55.43 0.76 -24.99 15 14 Si 1.07 24.29 29.91 -169.99 -5.08 19.20 15 15 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 17 H -0.29 -6.28 7.11 56.52 0.40 -5.88 15 18 C -0.12 -2.29 9.24 -39.64 -0.37 -2.66 15 19 C -0.09 -1.64 9.75 -39.19 -0.38 -2.02 15 20 H 0.22 1.84 7.80 -54.09 -0.42 1.42 15 21 H 0.12 1.79 8.06 -52.49 -0.42 1.36 15 22 H 0.12 2.33 8.03 -52.49 -0.42 1.91 15 23 H 0.32 6.55 7.17 -39.29 -0.28 6.27 15 24 H 0.33 7.60 9.02 -39.29 -0.35 7.25 15 25 H 0.27 7.72 6.66 -40.82 -0.27 7.44 15 26 H 0.12 2.24 6.58 -52.48 -0.35 1.89 15 27 H 0.12 1.76 8.06 -52.48 -0.42 1.33 15 LS Contribution 248.00 15.07 3.74 3.74 Total: -1.00 -28.74 248.00 -6.31 -35.05 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -2.49 Total: 13.16 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -3.17 Total: -27.30 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.69 Total: -43.85 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.08 Total: 19.20 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.74 -6.31 -35.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238618300.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.540 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds