Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48495 * 109.47015 * 240.00289 * 3 2 1 5 5 H 1.48498 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47079 * 120.00118 * 3 2 1 7 7 C 1.37881 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00018 * 185.24774 * 7 2 1 9 9 C 1.50702 * 119.99439 * 5.24652 * 7 2 1 10 10 C 1.53005 * 109.22275 * 295.76233 * 9 7 2 11 11 N 1.46900 * 109.47026 * 305.01695 * 10 9 7 12 12 C 1.52568 * 109.12528 * 176.48983 * 9 7 2 13 13 C 1.53095 * 109.96403 * 310.14784 * 12 9 7 14 14 S 1.81753 * 108.94793 * 297.17323 * 13 12 9 15 15 C 1.81749 * 102.21834 * 53.20086 * 14 13 12 16 16 C 1.52576 * 109.23034 * 55.16715 * 9 7 2 17 17 H 0.96999 * 120.00204 * 359.97438 * 1 2 3 18 18 H 1.09003 * 109.46698 * 65.01292 * 10 9 7 19 19 H 1.08994 * 109.46840 * 185.01118 * 10 9 7 20 20 H 1.00905 * 110.99989 * 180.02562 * 11 10 9 21 21 H 1.00901 * 110.99663 * 303.94567 * 11 10 9 22 22 H 1.09004 * 109.27456 * 190.06430 * 12 9 7 23 23 H 1.08997 * 109.49531 * 70.37085 * 12 9 7 24 24 H 1.08998 * 109.57865 * 177.30440 * 13 12 9 25 25 H 1.08994 * 109.57644 * 57.04459 * 13 12 9 26 26 H 1.09007 * 109.57298 * 66.54366 * 15 14 13 27 27 H 1.09001 * 109.57630 * 186.79155 * 15 14 13 28 28 H 1.09000 * 109.39155 * 289.49996 * 16 9 7 29 29 H 1.08994 * 109.39046 * 169.78921 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0811 -1.1960 0.0850 9 6 1.2557 -2.4963 -0.1205 10 6 0.3597 -2.6771 1.1065 11 7 1.1726 -2.5750 2.3258 12 6 2.2576 -3.6452 -0.1827 13 6 3.3289 -3.3481 -1.2353 14 16 2.5376 -3.2375 -2.8678 15 6 1.2247 -2.0149 -2.5768 16 6 0.3885 -2.4637 -1.3754 17 1 -0.4850 0.8400 0.0004 18 1 -0.4062 -1.9014 1.1145 19 1 -0.1160 -3.6570 1.0679 20 1 0.6034 -2.6914 3.1508 21 1 1.9298 -3.2418 2.3124 22 1 1.7351 -4.5644 -0.4476 23 1 2.7314 -3.7679 0.7913 24 1 4.0675 -4.1497 -1.2411 25 1 3.8180 -2.4025 -1.0017 26 1 1.6710 -1.0424 -2.3684 27 1 0.5898 -1.9435 -3.4599 28 1 -0.4359 -1.7661 -1.2276 29 1 -0.0115 -3.4597 -1.5649 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259487050.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = -7.235452 kcal Electronic energy + Delta-G solvation = -12070.511282 eV Core-core repulsion = 10119.311859 eV Total energy + Delta-G solvation = -1951.199423 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.51746 -32.32273 -31.90074 -30.23908 -26.83488 -24.87171 -22.34137 -21.47722 -18.80443 -16.26730 -15.29485 -14.95196 -14.47017 -13.53044 -13.45840 -13.18271 -12.81465 -12.22610 -11.83542 -11.65686 -11.31211 -11.05647 -10.67917 -10.59756 -10.26967 -10.02172 -9.62994 -9.06647 -8.74998 -8.63114 -8.33986 -7.40194 -6.81055 -5.91918 -3.94345 2.82717 3.35575 3.39589 3.43854 3.51246 4.48363 5.36150 5.69829 5.80015 5.89357 6.08789 6.24941 6.29769 6.39175 6.58091 6.64137 6.82529 6.90669 7.02662 7.23104 7.37806 7.64687 7.73121 8.11484 8.25124 8.51025 8.56245 8.97597 9.66604 11.11287 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.030017 B = 0.018476 C = 0.014625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.582013 B = 1515.107792 C = 1914.098697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.475 4.475 8 H 0.053 0.947 9 C 0.064 3.936 10 C 0.081 3.919 11 N -0.825 5.825 12 C -0.105 4.105 13 C -0.054 4.054 14 S -0.334 6.334 15 C -0.040 4.040 16 C -0.101 4.101 17 H 0.257 0.743 18 H 0.098 0.902 19 H -0.026 1.026 20 H 0.314 0.686 21 H 0.319 0.681 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 -4.607 -0.493 4.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.711 3.289 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.063 3.937 10 C -0.049 4.049 11 N -0.352 5.352 12 C -0.144 4.144 13 C -0.202 4.202 14 S -0.109 6.109 15 C -0.188 4.188 16 C -0.140 4.140 17 H 0.068 0.932 18 H 0.116 0.884 19 H -0.008 1.008 20 H 0.124 0.876 21 H 0.131 0.869 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.774 -4.258 -1.699 4.915 hybrid contribution -0.099 0.587 1.316 1.444 sum 1.675 -3.671 -0.383 4.053 Atomic orbital electron populations 1.69747 1.05703 1.26042 1.51461 1.24740 0.94652 0.98424 0.95029 0.86810 0.79757 0.83879 0.78450 1.20578 1.21613 1.20431 1.20764 0.92490 0.89458 1.48553 0.92847 1.18112 0.91562 0.93100 0.90902 1.21890 0.96580 0.96100 0.90372 1.58647 1.14209 1.58812 1.03581 1.21740 0.96940 0.99027 0.96708 1.23261 0.99261 1.04566 0.93106 1.86046 1.43916 1.59978 1.20969 1.23317 0.95669 0.99298 1.00473 1.21590 0.99949 0.98687 0.93806 0.93247 0.88440 1.00793 0.87574 0.86903 0.93885 0.92567 0.90781 0.88841 0.88441 0.91109 0.88227 0.95594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.28 9.50 55.43 0.53 -22.76 15 2 C 0.07 1.85 4.50 -17.82 -0.08 1.77 15 3 Si 0.88 20.87 29.54 -169.99 -5.02 15.85 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 7 C -0.47 -11.74 5.15 -34.44 -0.18 -11.92 15 8 H 0.05 1.37 6.14 -52.49 -0.32 1.05 15 9 C 0.06 1.43 0.33 -156.10 -0.05 1.38 15 10 C 0.08 1.80 5.46 -3.82 -0.02 1.78 15 11 N -0.83 -16.75 9.04 -10.37 -0.09 -16.84 15 12 C -0.11 -2.10 4.62 -26.90 -0.12 -2.22 15 13 C -0.05 -1.05 6.14 37.21 0.23 -0.82 15 14 S -0.33 -6.76 22.33 -107.50 -2.40 -9.16 15 15 C -0.04 -0.86 6.14 37.21 0.23 -0.63 15 16 C -0.10 -2.24 4.23 -26.90 -0.11 -2.36 15 17 H 0.26 6.66 8.31 -40.82 -0.34 6.32 15 18 H 0.10 2.44 6.27 -51.93 -0.33 2.12 15 19 H -0.03 -0.55 8.14 -51.93 -0.42 -0.97 15 20 H 0.31 5.62 9.08 -39.29 -0.36 5.26 15 21 H 0.32 5.94 6.99 -39.29 -0.27 5.66 15 22 H 0.04 0.84 8.06 -51.93 -0.42 0.42 15 23 H 0.06 1.07 6.19 -51.93 -0.32 0.75 15 24 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 25 H 0.09 1.94 6.02 -51.93 -0.31 1.63 15 26 H 0.10 2.30 6.38 -51.92 -0.33 1.97 15 27 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 28 H 0.10 2.43 6.16 -51.93 -0.32 2.11 15 29 H 0.03 0.55 8.06 -51.93 -0.42 0.13 15 LS Contribution 230.39 15.07 3.47 3.47 Total: -1.00 -25.82 230.39 -7.43 -33.25 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.80 Total: 9.21 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.11 Total: -13.03 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.43 Total: -39.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -6.76 SS G_CDS: -2.40 Total: -9.16 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -25.82 -7.43 -33.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259487050.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.014 kcal (2) G-P(sol) polarization free energy of solvation -25.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds