Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48495 * 109.47015 * 240.00289 * 3 2 1 5 5 H 1.48498 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47079 * 120.00118 * 3 2 1 7 7 C 1.37881 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00018 * 185.24774 * 7 2 1 9 9 C 1.50702 * 119.99439 * 5.24652 * 7 2 1 10 10 C 1.53005 * 109.22275 * 295.76233 * 9 7 2 11 11 N 1.46900 * 109.47026 * 305.01695 * 10 9 7 12 12 C 1.52568 * 109.12528 * 176.48983 * 9 7 2 13 13 C 1.53095 * 109.96403 * 310.14784 * 12 9 7 14 14 S 1.81753 * 108.94793 * 297.17323 * 13 12 9 15 15 C 1.81749 * 102.21834 * 53.20086 * 14 13 12 16 16 C 1.52576 * 109.23034 * 55.16715 * 9 7 2 17 17 H 0.96999 * 120.00204 * 359.97438 * 1 2 3 18 18 H 1.09003 * 109.46698 * 65.01292 * 10 9 7 19 19 H 1.08994 * 109.46840 * 185.01118 * 10 9 7 20 20 H 1.00905 * 110.99989 * 180.02562 * 11 10 9 21 21 H 1.00901 * 110.99663 * 303.94567 * 11 10 9 22 22 H 1.09004 * 109.27456 * 190.06430 * 12 9 7 23 23 H 1.08997 * 109.49531 * 70.37085 * 12 9 7 24 24 H 1.08998 * 109.57865 * 177.30440 * 13 12 9 25 25 H 1.08994 * 109.57644 * 57.04459 * 13 12 9 26 26 H 1.09007 * 109.57298 * 66.54366 * 15 14 13 27 27 H 1.09001 * 109.57630 * 186.79155 * 15 14 13 28 28 H 1.09000 * 109.39155 * 289.49996 * 16 9 7 29 29 H 1.08994 * 109.39046 * 169.78921 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0811 -1.1960 0.0850 9 6 1.2557 -2.4963 -0.1205 10 6 0.3597 -2.6771 1.1065 11 7 1.1726 -2.5750 2.3258 12 6 2.2576 -3.6452 -0.1827 13 6 3.3289 -3.3481 -1.2353 14 16 2.5376 -3.2375 -2.8678 15 6 1.2247 -2.0149 -2.5768 16 6 0.3885 -2.4637 -1.3754 17 1 -0.4850 0.8400 0.0004 18 1 -0.4062 -1.9014 1.1145 19 1 -0.1160 -3.6570 1.0679 20 1 0.6034 -2.6914 3.1508 21 1 1.9298 -3.2418 2.3124 22 1 1.7351 -4.5644 -0.4476 23 1 2.7314 -3.7679 0.7913 24 1 4.0675 -4.1497 -1.2411 25 1 3.8180 -2.4025 -1.0017 26 1 1.6710 -1.0424 -2.3684 27 1 0.5898 -1.9435 -3.4599 28 1 -0.4359 -1.7661 -1.2276 29 1 -0.0115 -3.4597 -1.5649 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259487050.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = -23.044065 kcal Electronic energy + Delta-G solvation = -12071.196795 eV Core-core repulsion = 10119.311859 eV Total energy + Delta-G solvation = -1951.884936 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.26104 -34.05975 -33.72271 -31.93251 -28.56225 -26.77900 -23.96556 -23.21211 -20.62506 -18.01555 -17.03223 -16.78305 -16.22851 -15.25796 -15.20952 -14.86077 -14.49328 -13.91169 -13.59943 -13.27348 -13.08824 -12.87165 -12.48916 -12.47787 -12.06746 -11.81438 -11.39171 -10.80970 -10.52414 -10.36057 -10.25852 -9.03762 -8.43281 -7.86897 -5.91801 1.21762 1.44851 1.48006 1.51364 1.87011 2.54449 3.39874 4.09726 4.24284 4.31042 4.44010 4.54572 4.67286 4.70340 4.88262 4.99833 5.18171 5.24167 5.30190 5.45487 5.60998 5.81206 5.87023 6.25113 6.46502 6.80638 6.99906 7.08495 7.69569 9.13281 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.030017 B = 0.018476 C = 0.014625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.582013 B = 1515.107792 C = 1914.098697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.037 3.963 3 Si 0.920 3.080 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.284 1.284 7 C -0.468 4.468 8 H 0.044 0.956 9 C 0.057 3.943 10 C 0.088 3.912 11 N -0.834 5.834 12 C -0.100 4.100 13 C -0.053 4.053 14 S -0.321 6.321 15 C -0.041 4.041 16 C -0.095 4.095 17 H 0.252 0.748 18 H 0.066 0.934 19 H -0.015 1.015 20 H 0.328 0.672 21 H 0.330 0.670 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -5.710 -0.489 6.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.161 4.161 3 Si 0.750 3.250 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.210 1.210 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.057 3.943 10 C -0.043 4.043 11 N -0.364 5.364 12 C -0.139 4.139 13 C -0.201 4.201 14 S -0.096 6.096 15 C -0.188 4.188 16 C -0.134 4.134 17 H 0.061 0.939 18 H 0.084 0.916 19 H 0.003 0.997 20 H 0.140 0.860 21 H 0.144 0.856 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.122 0.878 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.604 -5.366 -1.689 6.199 hybrid contribution -0.329 0.902 1.325 1.636 sum 2.276 -4.464 -0.364 5.024 Atomic orbital electron populations 1.69870 1.06224 1.25779 1.52558 1.25161 0.95103 1.00160 0.95692 0.86215 0.78768 0.82096 0.77959 1.20561 1.22067 1.20977 1.20892 0.92053 0.90475 1.47185 0.93777 1.18172 0.92053 0.93105 0.91010 1.21657 0.96062 0.95508 0.91058 1.58535 1.14732 1.59545 1.03584 1.21660 0.96497 0.98124 0.97613 1.23300 0.99549 1.04924 0.92345 1.85997 1.43121 1.58913 1.21591 1.23180 0.96308 0.98619 1.00741 1.21481 0.99346 0.98364 0.94247 0.93884 0.91571 0.99678 0.86015 0.85592 0.92997 0.91387 0.87794 0.90329 0.90910 0.89880 0.90671 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.62 9.50 21.45 0.20 -47.42 15 2 C 0.04 1.90 4.50 84.66 0.38 2.28 15 3 Si 0.92 42.74 29.54 68.60 2.03 44.77 15 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 15 6 H -0.28 -13.32 7.11 99.48 0.71 -12.61 15 7 C -0.47 -22.75 5.15 25.60 0.13 -22.62 15 8 H 0.04 2.21 6.14 -2.91 -0.02 2.19 15 9 C 0.06 2.49 0.33 -53.21 -0.02 2.47 15 10 C 0.09 3.80 5.46 86.30 0.47 4.27 15 11 N -0.83 -32.38 9.04 -186.71 -1.69 -34.07 15 12 C -0.10 -3.71 4.62 30.48 0.14 -3.57 15 13 C -0.05 -1.92 6.14 72.01 0.44 -1.48 15 14 S -0.32 -12.25 22.33 -56.49 -1.26 -13.52 15 15 C -0.04 -1.70 6.14 72.02 0.44 -1.26 15 16 C -0.09 -4.13 4.23 30.49 0.13 -4.00 15 17 H 0.25 13.18 8.31 -92.71 -0.77 12.41 15 18 H 0.07 3.31 6.27 -2.39 -0.01 3.29 15 19 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 15 20 H 0.33 11.16 9.08 -89.69 -0.81 10.34 15 21 H 0.33 11.48 6.99 -89.69 -0.63 10.85 15 22 H 0.05 1.85 8.06 -2.38 -0.02 1.83 15 23 H 0.07 2.37 6.19 -2.39 -0.01 2.35 15 24 H 0.10 3.15 8.14 -2.39 -0.02 3.13 15 25 H 0.08 3.10 6.02 -2.39 -0.01 3.08 15 26 H 0.07 3.41 6.38 -2.38 -0.02 3.39 15 27 H 0.08 3.21 8.14 -2.39 -0.02 3.19 15 28 H 0.08 3.68 6.16 -2.39 -0.01 3.66 15 29 H 0.03 1.40 8.06 -2.39 -0.02 1.38 15 Total: -1.00 -52.62 230.39 1.12 -51.50 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.28 Total: 22.64 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 2.12 Total: -23.91 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -1.48 Total: -81.49 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: -12.25 SS G_CDS: -1.26 Total: -13.52 kcal Total: -52.62 1.12 -51.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259487050.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.458 kcal (2) G-P(sol) polarization free energy of solvation -52.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds