Wall clock time and date at job start Mon Mar 30 2020 01:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35752 * 119.82704 * 2 1 4 4 C 1.40487 * 120.14729 * 180.02562 * 3 2 1 5 5 C 1.41603 * 133.31487 * 179.97438 * 4 3 2 6 6 C 1.34717 * 107.92650 * 180.02562 * 5 4 3 7 7 N 1.36654 * 109.71443 * 0.26377 * 6 5 4 8 8 H 0.97003 * 125.58937 * 179.70497 * 7 6 5 9 9 C 1.38093 * 108.82059 * 359.56767 * 7 6 5 10 10 C 1.38163 * 133.27340 * 180.09341 * 9 7 6 11 11 C 1.40626 * 119.57989 * 180.36270 * 10 9 7 12 12 C 1.41018 * 119.97201 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00256 * 153.84684 * 12 11 10 14 14 C 1.39887 * 119.99989 * 333.84960 * 12 11 10 15 15 N 1.30874 * 120.00257 * 343.23187 * 14 12 11 16 16 Si 1.86805 * 119.99964 * 163.23104 * 14 12 11 17 17 H 1.48500 * 109.47273 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47178 * 120.00072 * 16 14 12 19 19 H 1.48498 * 109.46876 * 239.99816 * 16 14 12 20 20 H 1.09001 * 109.46821 * 270.00538 * 1 2 3 21 21 H 1.08999 * 109.47096 * 30.00384 * 1 2 3 22 22 H 1.08998 * 109.46950 * 150.00999 * 1 2 3 23 23 H 1.07996 * 119.93123 * 0.03742 * 3 2 1 24 24 H 1.07995 * 126.03498 * 0.03798 * 5 4 3 25 25 H 1.08001 * 125.14292 * 180.02562 * 6 5 4 26 26 H 1.07997 * 120.21381 * 0.38398 * 10 9 7 27 27 H 0.97005 * 120.00728 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1823 1.1777 0.0000 4 6 3.5871 1.1855 -0.0005 5 6 4.5528 2.2212 -0.0011 6 6 5.7730 1.6505 -0.0021 7 7 5.6455 0.2899 -0.0080 8 1 6.3783 -0.3458 -0.0139 9 6 4.3026 -0.0317 -0.0012 10 6 3.6159 -1.2306 -0.0012 11 6 2.2096 -1.2251 -0.0006 12 6 1.5003 -2.4439 -0.0011 13 1 0.5032 -2.4886 0.4115 14 6 2.0882 -3.5950 -0.5361 15 7 3.1321 -3.4934 -1.3188 16 14 1.3832 -5.2773 -0.1331 17 1 0.2123 -5.1208 0.7668 18 1 0.9579 -5.9492 -1.3872 19 1 2.4193 -6.0994 0.5420 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8901 -0.5137 23 1 1.6384 2.1107 0.0006 24 1 4.3473 3.2815 -0.0007 25 1 6.7103 2.1870 -0.0023 26 1 4.1555 -2.1661 -0.0012 27 1 3.5400 -4.2916 -1.6895 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259560402.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:10 Heat of formation + Delta-G solvation = 39.883093 kcal Electronic energy + Delta-G solvation = -12221.149566 eV Core-core repulsion = 10136.549404 eV Total energy + Delta-G solvation = -2084.600161 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.90351 -36.32867 -33.37030 -30.52071 -30.13100 -28.24528 -25.35079 -24.48761 -21.13291 -19.89964 -19.09946 -17.16568 -16.63903 -14.96944 -14.32692 -13.49866 -13.24845 -13.15769 -12.38305 -12.32161 -12.24785 -12.13379 -11.36744 -11.09146 -10.87737 -10.78179 -10.47206 -9.76551 -9.64894 -9.36482 -9.05705 -8.38611 -6.89876 -6.64783 -6.46817 -4.22150 2.54414 2.95325 3.09926 3.15308 3.27753 3.93397 3.98063 4.31298 4.74412 5.69911 5.81956 6.07923 6.31823 6.40789 6.62524 6.67170 6.70054 6.84910 7.01799 7.16390 7.34014 7.36928 7.48605 7.85775 7.95094 8.05719 8.26086 8.36168 8.72079 8.72553 8.96165 9.05654 10.25237 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.041884 B = 0.011661 C = 0.009369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.359611 B = 2400.556067 C = 2987.920976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.170 4.170 3 C -0.070 4.070 4 C -0.198 4.198 5 C -0.189 4.189 6 C -0.019 4.019 7 N -0.608 5.608 8 H 0.402 0.598 9 C 0.127 3.873 10 C -0.210 4.210 11 C 0.128 3.872 12 C -0.455 4.455 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.793 5.793 16 Si 0.904 3.096 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.274 1.274 20 H 0.044 0.956 21 H 0.039 0.961 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.119 0.881 25 H 0.146 0.854 26 H 0.115 0.885 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 2.644 1.571 3.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.171 4.171 3 C -0.089 4.089 4 C -0.202 4.202 5 C -0.215 4.215 6 C -0.144 4.144 7 N -0.213 5.213 8 H 0.237 0.763 9 C 0.021 3.979 10 C -0.233 4.233 11 C 0.124 3.876 12 C -0.485 4.485 13 H 0.099 0.901 14 C -0.142 4.142 15 N -0.419 5.419 16 Si 0.729 3.271 17 H -0.184 1.184 18 H -0.201 1.201 19 H -0.199 1.199 20 H 0.063 0.937 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.109 0.891 24 H 0.137 0.863 25 H 0.163 0.837 26 H 0.133 0.867 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.602 2.471 1.419 3.269 hybrid contribution 0.290 -1.036 0.021 1.076 sum 1.892 1.435 1.440 2.777 Atomic orbital electron populations 1.20475 0.93347 1.00811 0.99910 1.19524 0.94557 0.93194 1.09867 1.19679 0.91655 0.96048 1.01546 1.17842 0.92965 0.92325 1.17040 1.20402 0.91936 0.97308 1.11878 1.21317 0.98268 0.83114 1.11661 1.41691 1.06217 1.05995 1.67378 0.76305 1.18435 0.81916 0.95779 1.01741 1.20026 0.93732 0.93325 1.16261 1.17093 0.90671 0.91435 0.88384 1.19485 1.01878 0.92539 1.34607 0.90090 1.25887 0.94348 1.01205 0.92808 1.69891 1.18895 1.31057 1.22019 0.86330 0.80008 0.81599 0.79176 1.18385 1.20116 1.19905 0.93736 0.94183 0.91757 0.89112 0.86263 0.83689 0.86749 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.84 9.37 36.01 0.34 -1.50 15 2 C -0.17 -4.19 5.89 -104.38 -0.62 -4.81 15 3 C -0.07 -1.67 9.65 -39.63 -0.38 -2.05 15 4 C -0.20 -4.80 6.19 -106.64 -0.66 -5.46 15 5 C -0.19 -3.91 10.85 -39.55 -0.43 -4.34 15 6 C -0.02 -0.35 11.84 -16.65 -0.20 -0.55 15 7 N -0.61 -12.50 6.15 -10.59 -0.07 -12.56 15 8 H 0.40 7.00 8.96 -40.82 -0.37 6.64 15 9 C 0.13 3.15 7.24 -83.95 -0.61 2.54 15 10 C -0.21 -5.62 8.68 -38.71 -0.34 -5.96 15 11 C 0.13 3.44 5.56 -106.81 -0.59 2.85 15 12 C -0.45 -11.95 8.07 -37.91 -0.31 -12.26 15 13 H 0.08 2.03 6.85 -52.49 -0.36 1.67 15 14 C 0.07 1.88 5.14 -17.34 -0.09 1.79 15 15 N -0.79 -20.68 10.98 55.54 0.61 -20.07 15 16 Si 0.90 18.67 29.59 -169.99 -5.03 13.64 15 17 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 18 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 20 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.04 0.73 8.07 -51.93 -0.42 0.31 15 22 H 0.06 1.35 6.74 -51.93 -0.35 1.00 15 23 H 0.09 1.90 8.06 -52.49 -0.42 1.48 15 24 H 0.12 2.13 8.06 -52.49 -0.42 1.71 15 25 H 0.15 2.08 8.06 -52.49 -0.42 1.66 15 26 H 0.11 3.15 6.22 -52.49 -0.33 2.82 15 27 H 0.28 6.58 8.30 -40.82 -0.34 6.24 15 LS Contribution 233.98 15.07 3.53 3.53 Total: -1.00 -29.07 233.98 -7.49 -36.56 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -2.65 Total: 8.65 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -3.88 Total: -29.74 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.54 Total: -32.64 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.07 -7.49 -36.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259560402.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.441 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds