Wall clock time and date at job start Mon Mar 30 2020 01:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35752 * 119.82704 * 2 1 4 4 C 1.40487 * 120.14729 * 180.02562 * 3 2 1 5 5 C 1.41603 * 133.31487 * 179.97438 * 4 3 2 6 6 C 1.34717 * 107.92650 * 180.02562 * 5 4 3 7 7 N 1.36654 * 109.71443 * 0.26377 * 6 5 4 8 8 H 0.97003 * 125.58937 * 179.70497 * 7 6 5 9 9 C 1.38093 * 108.82059 * 359.56767 * 7 6 5 10 10 C 1.38163 * 133.27340 * 180.09341 * 9 7 6 11 11 C 1.40626 * 119.57989 * 180.36270 * 10 9 7 12 12 C 1.41018 * 119.97201 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00256 * 153.84684 * 12 11 10 14 14 C 1.39887 * 119.99989 * 333.84960 * 12 11 10 15 15 N 1.30874 * 120.00257 * 343.23187 * 14 12 11 16 16 Si 1.86805 * 119.99964 * 163.23104 * 14 12 11 17 17 H 1.48500 * 109.47273 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47178 * 120.00072 * 16 14 12 19 19 H 1.48498 * 109.46876 * 239.99816 * 16 14 12 20 20 H 1.09001 * 109.46821 * 270.00538 * 1 2 3 21 21 H 1.08999 * 109.47096 * 30.00384 * 1 2 3 22 22 H 1.08998 * 109.46950 * 150.00999 * 1 2 3 23 23 H 1.07996 * 119.93123 * 0.03742 * 3 2 1 24 24 H 1.07995 * 126.03498 * 0.03798 * 5 4 3 25 25 H 1.08001 * 125.14292 * 180.02562 * 6 5 4 26 26 H 1.07997 * 120.21381 * 0.38398 * 10 9 7 27 27 H 0.97005 * 120.00728 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1823 1.1777 0.0000 4 6 3.5871 1.1855 -0.0005 5 6 4.5528 2.2212 -0.0011 6 6 5.7730 1.6505 -0.0021 7 7 5.6455 0.2899 -0.0080 8 1 6.3783 -0.3458 -0.0139 9 6 4.3026 -0.0317 -0.0012 10 6 3.6159 -1.2306 -0.0012 11 6 2.2096 -1.2251 -0.0006 12 6 1.5003 -2.4439 -0.0011 13 1 0.5032 -2.4886 0.4115 14 6 2.0882 -3.5950 -0.5361 15 7 3.1321 -3.4934 -1.3188 16 14 1.3832 -5.2773 -0.1331 17 1 0.2123 -5.1208 0.7668 18 1 0.9579 -5.9492 -1.3872 19 1 2.4193 -6.0994 0.5420 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8901 -0.5137 23 1 1.6384 2.1107 0.0006 24 1 4.3473 3.2815 -0.0007 25 1 6.7103 2.1870 -0.0023 26 1 4.1555 -2.1661 -0.0012 27 1 3.5400 -4.2916 -1.6895 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259560402.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:10 Heat of formation + Delta-G solvation = 23.190354 kcal Electronic energy + Delta-G solvation = -12221.873417 eV Core-core repulsion = 10136.549404 eV Total energy + Delta-G solvation = -2085.324013 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.62614 -38.13114 -35.23244 -32.30017 -31.87915 -30.04047 -27.11860 -26.28990 -22.98029 -21.63458 -20.79037 -19.02508 -18.39364 -16.73872 -16.08707 -15.32538 -14.98217 -14.87575 -14.16394 -14.03743 -13.91496 -13.70966 -13.09176 -12.78547 -12.59135 -12.53004 -12.12853 -11.57134 -11.46796 -11.20748 -10.90611 -10.16222 -8.75516 -8.48981 -8.24978 -6.16557 0.78388 1.20219 1.40108 1.52135 1.55161 2.21931 2.26417 2.71021 2.88214 3.78558 4.29871 4.47302 4.68557 4.75728 4.95611 4.97469 5.06350 5.14711 5.20969 5.38928 5.54226 5.60021 5.64938 6.02494 6.14838 6.22792 6.43228 6.49227 6.81524 7.02995 7.10502 7.19925 8.41478 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.041884 B = 0.011661 C = 0.009369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.359611 B = 2400.556067 C = 2987.920976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.190 4.190 3 C -0.081 4.081 4 C -0.214 4.214 5 C -0.216 4.216 6 C 0.011 3.989 7 N -0.603 5.603 8 H 0.416 0.584 9 C 0.095 3.905 10 C -0.232 4.232 11 C 0.092 3.908 12 C -0.485 4.485 13 H 0.083 0.917 14 C 0.031 3.969 15 N -0.830 5.830 16 Si 0.979 3.021 17 H -0.255 1.255 18 H -0.268 1.268 19 H -0.269 1.269 20 H 0.058 0.942 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.118 0.882 24 H 0.149 0.851 25 H 0.201 0.799 26 H 0.094 0.906 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 3.672 1.838 4.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.191 4.191 3 C -0.099 4.099 4 C -0.218 4.218 5 C -0.241 4.241 6 C -0.114 4.114 7 N -0.208 5.208 8 H 0.253 0.747 9 C -0.011 4.011 10 C -0.256 4.256 11 C 0.089 3.911 12 C -0.515 4.515 13 H 0.101 0.899 14 C -0.182 4.182 15 N -0.457 5.457 16 Si 0.800 3.200 17 H -0.178 1.178 18 H -0.193 1.193 19 H -0.194 1.194 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.136 0.864 24 H 0.167 0.833 25 H 0.217 0.783 26 H 0.112 0.888 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.072 3.505 1.687 4.407 hybrid contribution 0.293 -1.192 -0.066 1.229 sum 2.366 2.313 1.621 3.684 Atomic orbital electron populations 1.20442 0.91000 1.01451 1.00957 1.19951 0.96569 0.92864 1.09754 1.20041 0.92062 0.96843 1.00994 1.18407 0.93846 0.93334 1.16244 1.20784 0.91629 0.98294 1.13401 1.22188 1.00000 0.82010 1.07225 1.41831 1.05203 1.07409 1.66354 0.74747 1.18569 0.84026 0.95593 1.02959 1.19987 0.94226 0.93429 1.17965 1.17512 0.91219 0.92845 0.89551 1.19715 1.02362 0.93489 1.35955 0.89904 1.26746 0.94577 1.04830 0.92071 1.69964 1.20340 1.32338 1.23024 0.85204 0.79264 0.76411 0.79083 1.17838 1.19299 1.19437 0.92374 0.91752 0.92802 0.86405 0.83322 0.78265 0.88811 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.36 9.37 71.24 0.67 -2.69 15 2 C -0.19 -9.47 5.89 -19.71 -0.12 -9.59 15 3 C -0.08 -3.78 9.65 22.24 0.21 -3.57 15 4 C -0.21 -10.18 6.19 -21.17 -0.13 -10.32 15 5 C -0.22 -8.28 10.85 22.29 0.24 -8.03 15 6 C 0.01 0.36 11.84 83.13 0.98 1.35 15 7 N -0.60 -23.77 6.15 -187.41 -1.15 -24.92 15 8 H 0.42 13.86 8.96 -92.71 -0.83 13.02 15 9 C 0.10 4.75 7.24 38.87 0.28 5.03 15 10 C -0.23 -12.94 8.68 22.84 0.20 -12.75 15 11 C 0.09 5.14 5.56 -21.28 -0.12 5.02 15 12 C -0.49 -26.36 8.07 23.35 0.19 -26.18 15 13 H 0.08 4.28 6.85 -2.91 -0.02 4.26 15 14 C 0.03 1.62 5.14 85.23 0.44 2.05 15 15 N -0.83 -44.85 10.98 21.82 0.24 -44.61 15 16 Si 0.98 38.96 29.59 68.60 2.03 40.99 15 17 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 18 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 19 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 20 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 21 H 0.06 2.26 8.07 -2.39 -0.02 2.25 15 22 H 0.05 2.28 6.74 -2.39 -0.02 2.27 15 23 H 0.12 4.71 8.06 -2.91 -0.02 4.69 15 24 H 0.15 4.73 8.06 -2.91 -0.02 4.70 15 25 H 0.20 4.48 8.06 -2.91 -0.02 4.46 15 26 H 0.09 5.45 6.22 -2.91 -0.02 5.44 15 27 H 0.28 13.84 8.30 -92.70 -0.77 13.07 15 Total: -1.00 -64.55 233.98 4.32 -60.22 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.36 Total: 27.98 kcal Atomic # 6 Polarization: -62.51 SS G_CDS: 2.85 Total: -59.66 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: -0.91 Total: -69.53 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -64.55 4.32 -60.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259560402.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.414 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds