Wall clock time and date at job start Mon Mar 30 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 120.00182 * 2 1 4 4 H 1.48504 * 109.46906 * 274.63587 * 3 2 1 5 5 H 1.48495 * 109.46948 * 34.63701 * 3 2 1 6 6 H 1.48498 * 109.47217 * 154.63951 * 3 2 1 7 7 C 1.37876 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00199 * 186.73757 * 7 2 1 9 9 C 1.50699 * 120.00285 * 6.73805 * 7 2 1 10 10 H 1.08998 * 109.46892 * 305.33279 * 9 7 2 11 11 C 1.53004 * 109.46876 * 65.32724 * 9 7 2 12 12 O 1.42902 * 109.46693 * 55.96360 * 11 9 7 13 13 N 1.46899 * 109.47331 * 185.32825 * 9 7 2 14 14 C 1.47014 * 110.99848 * 177.59818 * 13 9 7 15 15 C 1.53099 * 109.25896 * 177.61042 * 14 13 9 16 16 O 1.43006 * 109.25638 * 56.84632 * 15 14 13 17 17 C 1.43014 * 113.74223 * 301.32889 * 16 15 14 18 18 C 1.47010 * 111.00065 * 53.96746 * 13 9 7 19 19 H 0.97006 * 120.00107 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47194 * 175.95813 * 11 9 7 21 21 H 1.09000 * 109.47427 * 295.96518 * 11 9 7 22 22 H 0.96706 * 113.99538 * 180.02562 * 12 11 9 23 23 H 1.09001 * 109.50515 * 57.67374 * 14 13 9 24 24 H 1.09003 * 109.50507 * 297.54644 * 14 13 9 25 25 H 1.08996 * 109.50875 * 176.78555 * 15 14 13 26 26 H 1.08999 * 109.50279 * 296.86672 * 15 14 13 27 27 H 1.09008 * 109.50608 * 178.60465 * 17 16 15 28 28 H 1.08999 * 109.50920 * 298.73732 * 17 16 15 29 29 H 1.09001 * 109.50705 * 62.45076 * 18 13 9 30 30 H 1.09004 * 109.54006 * 302.34483 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3986 2.1030 -1.3955 5 1 1.4990 2.6224 0.7958 6 1 3.5922 1.4138 0.5997 7 6 2.0044 -1.1940 0.0005 8 1 3.0789 -1.1973 0.1103 9 6 1.2588 -2.4947 -0.1520 10 1 0.4809 -2.5590 0.6088 11 6 0.6200 -2.5565 -1.5409 12 8 1.6286 -2.3779 -2.5374 13 7 2.1936 -3.6167 0.0074 14 6 1.4902 -4.9047 -0.0788 15 6 2.5070 -6.0438 0.0324 16 8 3.2375 -5.9064 1.2541 17 6 3.9354 -4.6636 1.3711 18 6 2.9329 -3.5106 1.2736 19 1 -0.4850 0.8401 -0.0004 20 1 0.1415 -3.5262 -1.6780 21 1 -0.1258 -1.7669 -1.6333 22 1 1.2944 -2.4052 -3.4445 23 1 0.9706 -4.9725 -1.0346 24 1 0.7685 -4.9804 0.7346 25 1 1.9843 -7.0003 0.0264 26 1 3.1959 -6.0003 -0.8112 27 1 4.4456 -4.6219 2.3334 28 1 4.6663 -4.5795 0.5669 29 1 2.2343 -3.5640 2.1086 30 1 3.4666 -2.5607 1.3057 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259637921.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:17 Heat of formation + Delta-G solvation = -83.320675 kcal Electronic energy + Delta-G solvation = -13842.131523 eV Core-core repulsion = 11444.879926 eV Total energy + Delta-G solvation = -2397.251597 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.91119 -36.30372 -34.31244 -32.48629 -30.61942 -28.81086 -25.32015 -25.05605 -22.91374 -20.56643 -19.33863 -16.62579 -16.14138 -15.80672 -15.48704 -14.60860 -14.37829 -14.11824 -13.61951 -13.45212 -12.57546 -12.20386 -11.74984 -11.53998 -11.00308 -10.88734 -10.83740 -10.77202 -10.46212 -10.06412 -9.81307 -9.01700 -8.99830 -8.67160 -8.40063 -7.22212 -6.05811 -4.04154 3.32385 3.38579 3.42202 4.28606 4.41989 4.85791 5.28809 5.49748 5.59756 5.64681 5.70140 5.79774 5.86999 6.03168 6.16052 6.31813 6.45642 6.55553 6.67669 6.85435 7.14938 7.32327 7.56731 7.77350 7.93785 8.17097 8.48941 8.89153 8.97905 9.58722 11.04227 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.042645 B = 0.011753 C = 0.010256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.432172 B = 2381.715963 C = 2729.375430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.059 3.941 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.485 4.485 8 H 0.064 0.936 9 C 0.215 3.785 10 H 0.018 0.982 11 C 0.093 3.907 12 O -0.547 6.547 13 N -0.523 5.523 14 C 0.014 3.986 15 C 0.068 3.932 16 O -0.396 6.396 17 C 0.063 3.937 18 C 0.029 3.971 19 H 0.260 0.740 20 H 0.001 0.999 21 H 0.060 0.940 22 H 0.345 0.655 23 H 0.078 0.922 24 H 0.028 0.972 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 -7.280 -0.804 7.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.524 4.524 8 H 0.082 0.918 9 C 0.108 3.892 10 H 0.036 0.964 11 C 0.015 3.985 12 O -0.348 6.348 13 N -0.248 5.248 14 C -0.115 4.115 15 C -0.009 4.009 16 O -0.315 6.315 17 C -0.014 4.014 18 C -0.099 4.099 19 H 0.070 0.930 20 H 0.019 0.981 21 H 0.078 0.922 22 H 0.186 0.814 23 H 0.096 0.904 24 H 0.046 0.954 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.152 -7.220 -0.483 7.892 hybrid contribution -0.768 1.116 -0.126 1.361 sum 2.384 -6.103 -0.609 6.581 Atomic orbital electron populations 1.69921 1.05966 1.26706 1.51536 1.24905 0.94863 0.99248 0.95189 0.86462 0.79759 0.83081 0.77944 1.20711 1.21533 1.19882 1.20933 0.93782 0.89309 1.48345 0.91801 1.19349 0.90433 0.88339 0.91035 0.96419 1.22307 0.90212 0.95800 0.90186 1.86729 1.36263 1.96148 1.15659 1.62259 1.28826 1.01331 1.32432 1.22753 0.95926 0.91793 1.01019 1.22592 0.93775 0.97648 0.86930 1.87868 1.66409 1.37650 1.39561 1.22745 0.94151 0.83377 1.01158 1.22609 0.96841 0.99333 0.91153 0.92989 0.98150 0.92238 0.81359 0.90374 0.95375 0.89628 0.92786 0.89447 0.92825 0.95350 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 12.04 55.43 0.67 -25.08 16 2 C 0.06 1.63 5.27 -17.82 -0.09 1.53 16 3 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.49 -13.42 7.24 -34.44 -0.25 -13.67 16 8 H 0.06 1.79 6.49 -52.48 -0.34 1.45 16 9 C 0.21 5.47 1.72 -68.86 -0.12 5.35 16 10 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 11 C 0.09 2.22 6.29 37.16 0.23 2.45 16 12 O -0.55 -12.65 13.10 -35.23 -0.46 -13.11 16 13 N -0.52 -11.68 4.52 -227.72 -1.03 -12.71 16 14 C 0.01 0.27 5.39 -3.71 -0.02 0.25 16 15 C 0.07 1.11 7.01 37.21 0.26 1.37 16 16 O -0.40 -7.10 10.83 -35.23 -0.38 -7.48 16 17 C 0.06 1.08 7.01 37.21 0.26 1.34 16 18 C 0.03 0.60 5.32 -3.71 -0.02 0.58 16 19 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 20 H 0.00 0.01 6.21 -51.93 -0.32 -0.31 16 21 H 0.06 1.53 6.88 -51.93 -0.36 1.18 16 22 H 0.34 6.07 9.12 45.56 0.42 6.49 16 23 H 0.08 1.44 6.17 -51.93 -0.32 1.12 16 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 2.08 6.14 -51.93 -0.32 1.76 16 LS Contribution 242.88 15.07 3.66 3.66 Total: -1.00 -30.79 242.88 -5.65 -36.44 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -3.34 Total: 2.37 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 0.25 Total: -0.79 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.36 Total: -37.79 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.84 Total: -20.59 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.79 -5.65 -36.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259637921.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.885 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds