Wall clock time and date at job start Mon Mar 30 2020 02:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86805 * 120.00182 * 2 1 4 4 H 1.48504 * 109.46906 * 274.63587 * 3 2 1 5 5 H 1.48495 * 109.46948 * 34.63701 * 3 2 1 6 6 H 1.48498 * 109.47217 * 154.63951 * 3 2 1 7 7 C 1.37876 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00199 * 186.73757 * 7 2 1 9 9 C 1.50699 * 120.00285 * 6.73805 * 7 2 1 10 10 H 1.08998 * 109.46892 * 305.33279 * 9 7 2 11 11 C 1.53004 * 109.46876 * 65.32724 * 9 7 2 12 12 O 1.42902 * 109.46693 * 55.96360 * 11 9 7 13 13 N 1.46899 * 109.47331 * 185.32825 * 9 7 2 14 14 C 1.47014 * 110.99848 * 177.59818 * 13 9 7 15 15 C 1.53099 * 109.25896 * 177.61042 * 14 13 9 16 16 O 1.43006 * 109.25638 * 56.84632 * 15 14 13 17 17 C 1.43014 * 113.74223 * 301.32889 * 16 15 14 18 18 C 1.47010 * 111.00065 * 53.96746 * 13 9 7 19 19 H 0.97006 * 120.00107 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47194 * 175.95813 * 11 9 7 21 21 H 1.09000 * 109.47427 * 295.96518 * 11 9 7 22 22 H 0.96706 * 113.99538 * 180.02562 * 12 11 9 23 23 H 1.09001 * 109.50515 * 57.67374 * 14 13 9 24 24 H 1.09003 * 109.50507 * 297.54644 * 14 13 9 25 25 H 1.08996 * 109.50875 * 176.78555 * 15 14 13 26 26 H 1.08999 * 109.50279 * 296.86672 * 15 14 13 27 27 H 1.09008 * 109.50608 * 178.60465 * 17 16 15 28 28 H 1.08999 * 109.50920 * 298.73732 * 17 16 15 29 29 H 1.09001 * 109.50705 * 62.45076 * 18 13 9 30 30 H 1.09004 * 109.54006 * 302.34483 * 18 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3986 2.1030 -1.3955 5 1 1.4990 2.6224 0.7958 6 1 3.5922 1.4138 0.5997 7 6 2.0044 -1.1940 0.0005 8 1 3.0789 -1.1973 0.1103 9 6 1.2588 -2.4947 -0.1520 10 1 0.4809 -2.5590 0.6088 11 6 0.6200 -2.5565 -1.5409 12 8 1.6286 -2.3779 -2.5374 13 7 2.1936 -3.6167 0.0074 14 6 1.4902 -4.9047 -0.0788 15 6 2.5070 -6.0438 0.0324 16 8 3.2375 -5.9064 1.2541 17 6 3.9354 -4.6636 1.3711 18 6 2.9329 -3.5106 1.2736 19 1 -0.4850 0.8401 -0.0004 20 1 0.1415 -3.5262 -1.6780 21 1 -0.1258 -1.7669 -1.6333 22 1 1.2944 -2.4052 -3.4445 23 1 0.9706 -4.9725 -1.0346 24 1 0.7685 -4.9804 0.7346 25 1 1.9843 -7.0003 0.0264 26 1 3.1959 -6.0003 -0.8112 27 1 4.4456 -4.6219 2.3334 28 1 4.6663 -4.5795 0.5669 29 1 2.2343 -3.5640 2.1086 30 1 3.4666 -2.5607 1.3057 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259637921.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:17 Heat of formation + Delta-G solvation = -108.961624 kcal Electronic energy + Delta-G solvation = -13843.243398 eV Core-core repulsion = 11444.879926 eV Total energy + Delta-G solvation = -2398.363472 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.45231 -38.04877 -36.04786 -34.51717 -32.09121 -30.66400 -27.13875 -26.82849 -24.50543 -22.31027 -21.03887 -18.62203 -17.86936 -17.61220 -16.91570 -16.38412 -15.93932 -15.74085 -15.29736 -15.19541 -14.36317 -14.11615 -13.50301 -13.18445 -12.89748 -12.70738 -12.48379 -12.42351 -12.19580 -11.98311 -11.32302 -10.95140 -10.71673 -10.49282 -10.37405 -9.01329 -8.16960 -6.21800 1.39846 1.42270 1.51602 2.41344 2.94089 3.14858 3.22637 3.86861 4.06315 4.23292 4.26081 4.27766 4.41540 4.51394 4.74580 4.77317 4.86794 4.93848 5.00029 5.04122 5.27289 5.35481 5.67854 6.03479 6.19653 6.25961 6.63972 6.85409 7.26646 7.45149 8.92365 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.042645 B = 0.011753 C = 0.010256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.432172 B = 2381.715963 C = 2729.375430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.498 4.498 8 H 0.054 0.946 9 C 0.214 3.786 10 H -0.020 1.020 11 C 0.105 3.895 12 O -0.563 6.563 13 N -0.530 5.530 14 C 0.011 3.989 15 C 0.071 3.929 16 O -0.402 6.402 17 C 0.072 3.928 18 C 0.028 3.972 19 H 0.262 0.738 20 H 0.027 0.973 21 H 0.034 0.966 22 H 0.370 0.630 23 H 0.085 0.915 24 H 0.018 0.982 25 H 0.121 0.879 26 H 0.061 0.939 27 H 0.116 0.884 28 H 0.060 0.940 29 H 0.013 0.987 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 -8.108 -1.228 8.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.107 3.893 10 H -0.002 1.002 11 C 0.026 3.974 12 O -0.367 6.367 13 N -0.256 5.256 14 C -0.117 4.117 15 C -0.005 4.005 16 O -0.321 6.321 17 C -0.005 4.005 18 C -0.101 4.101 19 H 0.071 0.929 20 H 0.045 0.955 21 H 0.052 0.948 22 H 0.215 0.785 23 H 0.103 0.897 24 H 0.037 0.963 25 H 0.138 0.862 26 H 0.079 0.921 27 H 0.134 0.866 28 H 0.078 0.922 29 H 0.031 0.969 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.155 -8.066 -0.922 9.120 hybrid contribution -1.099 1.331 -0.013 1.726 sum 3.056 -6.735 -0.935 7.455 Atomic orbital electron populations 1.70030 1.07128 1.27409 1.52210 1.25635 0.95652 1.02303 0.94972 0.85533 0.78775 0.79318 0.77928 1.20476 1.20958 1.19271 1.21140 0.93448 0.90692 1.48325 0.92743 1.19168 0.89882 0.89091 0.91131 1.00222 1.22007 0.89536 0.96210 0.89645 1.86641 1.36528 1.96194 1.17308 1.62241 1.28359 1.01772 1.33216 1.22885 0.96622 0.91188 1.01008 1.22728 0.93237 0.97865 0.86691 1.87872 1.66477 1.37443 1.40319 1.22744 0.92992 0.81712 1.03058 1.22641 0.97053 1.00350 0.90013 0.92936 0.95513 0.94817 0.78465 0.89655 0.96337 0.86152 0.92107 0.86610 0.92197 0.96891 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.78 12.04 21.45 0.26 -53.52 16 2 C 0.01 0.69 5.27 84.66 0.45 1.14 16 3 Si 0.96 44.64 29.54 68.60 2.03 46.67 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.50 -27.88 7.24 25.60 0.19 -27.70 16 8 H 0.05 3.09 6.49 -2.91 -0.02 3.07 16 9 C 0.21 11.09 1.72 44.17 0.08 11.17 16 10 H -0.02 -1.13 8.11 -2.39 -0.02 -1.15 16 11 C 0.10 4.95 6.29 71.98 0.45 5.41 16 12 O -0.56 -25.34 13.10 -148.98 -1.95 -27.29 16 13 N -0.53 -23.50 4.52 -874.37 -3.95 -27.46 16 14 C 0.01 0.42 5.39 86.31 0.47 0.89 16 15 C 0.07 2.14 7.01 72.02 0.50 2.64 16 16 O -0.40 -13.31 10.83 -148.98 -1.61 -14.92 16 17 C 0.07 2.32 7.01 72.01 0.50 2.83 16 18 C 0.03 1.15 5.32 86.31 0.46 1.61 16 19 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 20 H 0.03 1.12 6.21 -2.39 -0.01 1.10 16 21 H 0.03 1.76 6.88 -2.39 -0.02 1.75 16 22 H 0.37 12.35 9.12 -74.05 -0.68 11.68 16 23 H 0.09 2.98 6.17 -2.39 -0.01 2.96 16 24 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 28 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 3.46 6.14 -2.38 -0.01 3.45 16 Total: -1.00 -65.39 242.88 -1.68 -67.07 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.46 Total: 11.49 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 3.09 Total: -2.02 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -3.70 Total: -80.98 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -3.56 Total: -42.21 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.39 -1.68 -67.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259637921.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.894 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds