Wall clock time and date at job start Mon Mar 30 2020 02:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46898 * 109.47175 * 2 1 4 4 C 1.46469 * 111.00230 * 284.44703 * 3 2 1 5 5 C 1.53245 * 109.85791 * 162.23234 * 4 3 2 6 6 S 1.81903 * 108.50711 * 62.00528 * 5 4 3 7 7 C 1.81903 * 101.91337 * 308.69615 * 6 5 4 8 8 C 1.46472 * 111.00040 * 158.46662 * 3 2 1 9 9 H 1.09001 * 109.40280 * 77.72495 * 8 3 2 10 10 C 1.50705 * 109.40525 * 317.88886 * 8 3 2 11 11 H 1.07996 * 120.00360 * 354.18662 * 10 8 3 12 12 C 1.37879 * 119.99759 * 174.18604 * 10 8 3 13 13 N 1.31514 * 120.00106 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99915 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47325 * 89.99818 * 14 12 10 16 16 H 1.48499 * 109.46964 * 210.00314 * 14 12 10 17 17 H 1.48501 * 109.46973 * 330.00048 * 14 12 10 18 18 H 1.09003 * 109.46843 * 59.99992 * 1 2 3 19 19 H 1.09007 * 109.46922 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47314 * 299.99888 * 1 2 3 21 21 H 1.09007 * 109.47288 * 240.00375 * 2 1 3 22 22 H 1.09003 * 109.47520 * 120.00330 * 2 1 3 23 23 H 1.08998 * 109.40021 * 42.11730 * 4 3 2 24 24 H 1.08998 * 109.40595 * 282.35187 * 4 3 2 25 25 H 1.08998 * 109.63124 * 181.71269 * 5 4 3 26 26 H 1.09001 * 109.63487 * 302.30311 * 5 4 3 27 27 H 1.09000 * 109.62775 * 291.59809 * 7 6 5 28 28 H 1.09001 * 109.79049 * 171.10275 * 7 6 5 29 29 H 0.97005 * 119.99943 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8730 1.9936 -1.3241 5 6 1.9621 3.5191 -1.2086 6 16 3.6070 3.9543 -0.5654 7 6 3.7259 2.8954 0.9089 8 6 3.3938 1.4559 0.5019 9 1 4.0819 1.1338 -0.2797 10 6 3.5370 0.5514 1.6988 11 1 2.6694 0.0544 2.1070 12 6 4.7757 0.3584 2.2728 13 7 5.8322 0.9640 1.7760 14 14 4.9534 -0.7633 3.7559 15 1 5.2248 -2.1497 3.2984 16 1 6.0795 -0.2915 4.6012 17 1 3.6970 -0.7402 4.5472 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8901 22 1 1.8933 -0.5139 0.8900 23 1 0.9056 1.7181 -1.7441 24 1 2.6666 1.6329 -1.9784 25 1 1.8223 3.9695 -2.1913 26 1 1.1942 3.8801 -0.5245 27 1 3.0157 3.2359 1.6625 28 1 4.7373 2.9377 1.3131 29 1 6.7036 0.8285 2.1800 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259639718.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:37 Heat of formation + Delta-G solvation = 2.674643 kcal Electronic energy + Delta-G solvation = -11686.655349 eV Core-core repulsion = 9735.885659 eV Total energy + Delta-G solvation = -1950.769690 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.60987 -33.21046 -31.47602 -30.18514 -27.20831 -25.43213 -22.49102 -21.32838 -19.55389 -16.70417 -15.79676 -14.98833 -14.49068 -14.14291 -13.58187 -13.04114 -12.99020 -12.48220 -12.17851 -11.89162 -11.14144 -11.08247 -10.98610 -10.82275 -10.69486 -10.41357 -10.28871 -9.87006 -9.21709 -8.67374 -8.50487 -7.32756 -6.84281 -6.17464 -4.24401 2.71616 3.22038 3.30136 3.32913 3.56607 4.29361 4.79664 5.15876 5.54486 5.67879 5.70944 5.87226 6.03618 6.05698 6.14850 6.35361 6.46733 6.56617 6.62194 6.78842 6.89036 7.21252 7.52087 7.63173 7.85767 8.12996 8.43979 8.83710 9.41477 10.89249 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.032890 B = 0.014613 C = 0.010645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.129540 B = 1915.615971 C = 2629.635457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 N -0.550 5.550 4 C 0.057 3.943 5 C -0.064 4.064 6 S -0.341 6.341 7 C -0.032 4.032 8 C 0.218 3.782 9 H 0.019 0.981 10 C -0.516 4.516 11 H 0.073 0.927 12 C 0.063 3.937 13 N -0.885 5.885 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 H 0.041 0.959 19 H 0.047 0.953 20 H 0.056 0.944 21 H 0.018 0.982 22 H 0.104 0.896 23 H 0.067 0.933 24 H 0.035 0.965 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.122 0.878 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.742 0.368 -3.226 7.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.078 4.078 3 N -0.275 5.275 4 C -0.073 4.073 5 C -0.213 4.213 6 S -0.115 6.115 7 C -0.180 4.180 8 C 0.111 3.889 9 H 0.036 0.964 10 C -0.556 4.556 11 H 0.091 0.909 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.726 3.274 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.197 1.197 18 H 0.060 0.940 19 H 0.066 0.934 20 H 0.075 0.925 21 H 0.037 0.963 22 H 0.122 0.878 23 H 0.086 0.914 24 H 0.053 0.947 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.062 1.436 -3.308 7.054 hybrid contribution -0.128 -1.709 0.666 1.839 sum -6.190 -0.273 -2.641 6.736 Atomic orbital electron populations 1.21815 0.96949 1.00043 1.01325 1.22146 0.93618 0.89745 1.02257 1.61202 1.25955 1.18014 1.22364 1.22133 1.00321 0.93063 0.91824 1.23292 0.96672 0.98616 1.02713 1.86524 1.24322 1.61261 1.39355 1.23913 1.06383 0.95496 0.92197 1.19320 0.82814 0.91302 0.95512 0.96373 1.21228 0.93936 1.26937 1.13489 0.90909 1.25016 0.95722 0.95920 0.97379 1.69906 0.99340 1.42327 1.40693 0.86474 0.77966 0.80620 0.82321 1.20550 1.21054 1.19661 0.93962 0.93422 0.92470 0.96347 0.87765 0.91429 0.94669 0.89237 0.90167 0.91732 0.86008 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 10.02 37.15 0.37 -1.88 15 2 C 0.05 0.97 5.44 -3.83 -0.02 0.95 15 3 N -0.55 -11.69 4.24 -228.43 -0.97 -12.66 15 4 C 0.06 1.05 5.24 -3.93 -0.02 1.03 15 5 C -0.06 -1.14 6.69 37.28 0.25 -0.89 15 6 S -0.34 -7.32 22.40 -107.50 -2.41 -9.73 15 7 C -0.03 -0.77 5.81 37.28 0.22 -0.55 15 8 C 0.22 5.41 1.78 -68.97 -0.12 5.28 15 9 H 0.02 0.52 7.91 -51.93 -0.41 0.11 15 10 C -0.52 -13.43 7.48 -34.44 -0.26 -13.69 15 11 H 0.07 1.86 5.84 -52.49 -0.31 1.56 15 12 C 0.06 1.67 5.32 -17.82 -0.09 1.57 15 13 N -0.89 -24.48 11.72 55.43 0.65 -23.83 15 14 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 15 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 18 H 0.04 0.61 6.74 -51.93 -0.35 0.26 15 19 H 0.05 0.65 8.14 -51.92 -0.42 0.23 15 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.02 0.35 8.00 -51.92 -0.42 -0.06 15 22 H 0.10 2.21 4.91 -51.93 -0.25 1.96 15 23 H 0.07 1.09 6.48 -51.93 -0.34 0.75 15 24 H 0.04 0.70 7.91 -51.93 -0.41 0.29 15 25 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 27 H 0.06 1.55 8.14 -51.93 -0.42 1.13 15 28 H 0.12 3.24 6.48 -51.93 -0.34 2.90 15 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 15 LS Contribution 240.27 15.07 3.62 3.62 Total: -1.00 -26.99 240.27 -7.87 -34.86 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.07 Total: 0.53 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 0.32 Total: -8.18 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.32 Total: -36.49 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: -7.32 SS G_CDS: -2.41 Total: -9.73 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -26.99 -7.87 -34.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639718.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.535 kcal (2) G-P(sol) polarization free energy of solvation -26.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds