Wall clock time and date at job start Mon Mar 30 2020 02:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46898 * 109.47175 * 2 1 4 4 C 1.46469 * 111.00230 * 284.44703 * 3 2 1 5 5 C 1.53245 * 109.85791 * 162.23234 * 4 3 2 6 6 S 1.81903 * 108.50711 * 62.00528 * 5 4 3 7 7 C 1.81903 * 101.91337 * 308.69615 * 6 5 4 8 8 C 1.46472 * 111.00040 * 158.46662 * 3 2 1 9 9 H 1.09001 * 109.40280 * 77.72495 * 8 3 2 10 10 C 1.50705 * 109.40525 * 317.88886 * 8 3 2 11 11 H 1.07996 * 120.00360 * 354.18662 * 10 8 3 12 12 C 1.37879 * 119.99759 * 174.18604 * 10 8 3 13 13 N 1.31514 * 120.00106 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99915 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47325 * 89.99818 * 14 12 10 16 16 H 1.48499 * 109.46964 * 210.00314 * 14 12 10 17 17 H 1.48501 * 109.46973 * 330.00048 * 14 12 10 18 18 H 1.09003 * 109.46843 * 59.99992 * 1 2 3 19 19 H 1.09007 * 109.46922 * 179.97438 * 1 2 3 20 20 H 1.08998 * 109.47314 * 299.99888 * 1 2 3 21 21 H 1.09007 * 109.47288 * 240.00375 * 2 1 3 22 22 H 1.09003 * 109.47520 * 120.00330 * 2 1 3 23 23 H 1.08998 * 109.40021 * 42.11730 * 4 3 2 24 24 H 1.08998 * 109.40595 * 282.35187 * 4 3 2 25 25 H 1.08998 * 109.63124 * 181.71269 * 5 4 3 26 26 H 1.09001 * 109.63487 * 302.30311 * 5 4 3 27 27 H 1.09000 * 109.62775 * 291.59809 * 7 6 5 28 28 H 1.09001 * 109.79049 * 171.10275 * 7 6 5 29 29 H 0.97005 * 119.99943 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8730 1.9936 -1.3241 5 6 1.9621 3.5191 -1.2086 6 16 3.6070 3.9543 -0.5654 7 6 3.7259 2.8954 0.9089 8 6 3.3938 1.4559 0.5019 9 1 4.0819 1.1338 -0.2797 10 6 3.5370 0.5514 1.6988 11 1 2.6694 0.0544 2.1070 12 6 4.7757 0.3584 2.2728 13 7 5.8322 0.9640 1.7760 14 14 4.9534 -0.7633 3.7559 15 1 5.2248 -2.1497 3.2984 16 1 6.0795 -0.2915 4.6012 17 1 3.6970 -0.7402 4.5472 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8901 22 1 1.8933 -0.5139 0.8900 23 1 0.9056 1.7181 -1.7441 24 1 2.6666 1.6329 -1.9784 25 1 1.8223 3.9695 -2.1913 26 1 1.1942 3.8801 -0.5245 27 1 3.0157 3.2359 1.6625 28 1 4.7373 2.9377 1.3131 29 1 6.7036 0.8285 2.1800 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259639718.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:37 Heat of formation + Delta-G solvation = -14.044050 kcal Electronic energy + Delta-G solvation = -11687.380326 eV Core-core repulsion = 9735.885659 eV Total energy + Delta-G solvation = -1951.494666 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.30296 -35.13470 -32.95617 -32.01828 -28.79488 -27.41386 -24.07182 -22.99114 -21.29816 -18.62414 -17.57968 -16.77480 -16.07737 -15.91254 -15.15567 -14.79599 -14.63350 -14.27200 -13.73992 -13.33574 -12.94411 -12.78015 -12.64675 -12.39946 -12.35868 -12.18483 -12.04104 -11.64858 -10.89053 -10.65625 -10.35289 -9.06072 -8.58386 -8.18946 -6.32951 1.06935 1.41764 1.43631 1.53878 1.80312 2.39057 3.10438 3.21384 4.05107 4.24483 4.27787 4.47711 4.54875 4.59815 4.68206 4.77841 4.84722 4.93257 5.09799 5.11050 5.36530 5.47262 5.57745 5.63409 5.98773 6.28085 6.66929 6.83649 7.37037 8.87213 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.032890 B = 0.014613 C = 0.010645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.129540 B = 1915.615971 C = 2629.635457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.047 3.953 3 N -0.553 5.553 4 C 0.055 3.945 5 C -0.052 4.052 6 S -0.357 6.357 7 C -0.026 4.026 8 C 0.227 3.773 9 H -0.027 1.027 10 C -0.527 4.527 11 H 0.076 0.924 12 C 0.015 3.985 13 N -0.918 5.918 14 Si 0.963 3.037 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.264 1.264 18 H 0.059 0.941 19 H 0.069 0.931 20 H 0.052 0.948 21 H 0.016 0.984 22 H 0.080 0.920 23 H 0.105 0.895 24 H 0.019 0.981 25 H 0.126 0.874 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.758 0.119 -3.601 9.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.081 4.081 3 N -0.279 5.279 4 C -0.075 4.075 5 C -0.200 4.200 6 S -0.130 6.130 7 C -0.175 4.175 8 C 0.118 3.882 9 H -0.009 1.009 10 C -0.567 4.567 11 H 0.094 0.906 12 C -0.186 4.186 13 N -0.556 5.556 14 Si 0.789 3.211 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.188 1.188 18 H 0.078 0.922 19 H 0.088 0.912 20 H 0.071 0.929 21 H 0.034 0.966 22 H 0.099 0.901 23 H 0.123 0.877 24 H 0.038 0.962 25 H 0.144 0.856 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.103 1.183 -3.691 8.982 hybrid contribution 0.453 -1.617 0.687 1.814 sum -7.650 -0.433 -3.004 8.230 Atomic orbital electron populations 1.21705 0.93442 1.01803 1.01913 1.22195 0.96371 0.88536 1.00982 1.61260 1.23273 1.19280 1.24066 1.22244 1.01661 0.93344 0.90216 1.23458 0.93758 0.98230 1.04542 1.86494 1.28087 1.60333 1.38110 1.23534 1.04372 0.96122 0.93456 1.19034 0.83976 0.91240 0.93943 1.00898 1.21538 0.94159 1.27141 1.13817 0.90618 1.25814 0.95441 0.97279 1.00023 1.70048 0.99719 1.43743 1.42121 0.85463 0.77987 0.78710 0.78989 1.20057 1.21074 1.18796 0.92230 0.91176 0.92891 0.96571 0.90137 0.87726 0.96231 0.85603 0.89017 0.92212 0.89152 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 10.02 71.98 0.72 -2.96 15 2 C 0.05 1.74 5.44 86.30 0.47 2.21 15 3 N -0.55 -22.98 4.24 -876.63 -3.71 -26.70 15 4 C 0.05 1.91 5.24 86.47 0.45 2.36 15 5 C -0.05 -1.69 6.69 72.06 0.48 -1.21 15 6 S -0.36 -15.14 22.40 -56.49 -1.27 -16.40 15 7 C -0.03 -1.29 5.81 72.06 0.42 -0.87 15 8 C 0.23 11.47 1.78 44.33 0.08 11.55 15 9 H -0.03 -1.55 7.91 -2.39 -0.02 -1.57 15 10 C -0.53 -27.92 7.48 25.60 0.19 -27.72 15 11 H 0.08 3.89 5.84 -2.91 -0.02 3.88 15 12 C 0.01 0.79 5.32 84.66 0.45 1.24 15 13 N -0.92 -52.42 11.72 21.45 0.25 -52.17 15 14 Si 0.96 42.28 29.54 68.60 2.03 44.31 15 15 H -0.27 -11.78 7.11 99.48 0.71 -11.08 15 16 H -0.29 -12.43 7.11 99.48 0.71 -11.73 15 17 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 18 H 0.06 1.47 6.74 -2.39 -0.02 1.45 15 19 H 0.07 1.67 8.14 -2.38 -0.02 1.65 15 20 H 0.05 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.02 0.60 8.00 -2.38 -0.02 0.58 15 22 H 0.08 3.40 4.91 -2.39 -0.01 3.38 15 23 H 0.10 2.92 6.48 -2.39 -0.02 2.90 15 24 H 0.02 0.75 7.91 -2.39 -0.02 0.73 15 25 H 0.13 3.27 8.14 -2.39 -0.02 3.25 15 26 H 0.09 2.87 8.14 -2.39 -0.02 2.85 15 27 H 0.06 2.93 8.14 -2.39 -0.02 2.91 15 28 H 0.09 5.03 6.48 -2.39 -0.02 5.01 15 29 H 0.26 14.39 8.31 -92.70 -0.77 13.62 15 Total: -1.00 -59.10 240.27 1.68 -57.42 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.12 Total: 8.95 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: 3.26 Total: -15.41 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -3.46 Total: -78.87 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: -15.14 SS G_CDS: -1.27 Total: -16.40 kcal Total: -59.10 1.68 -57.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639718.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.377 kcal (2) G-P(sol) polarization free energy of solvation -59.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds