Wall clock time and date at job start Mon Mar 30 2020 01:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35760 * 119.92259 * 2 1 4 4 C 1.41214 * 120.33851 * 180.02562 * 3 2 1 5 5 C 1.41022 * 119.97242 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99866 * 330.01709 * 5 4 3 7 7 C 1.39887 * 120.00255 * 150.01789 * 5 4 3 8 8 N 1.30885 * 119.99895 * 161.70526 * 7 5 4 9 9 Si 1.86797 * 120.00076 * 341.70456 * 7 5 4 10 10 H 1.48496 * 109.47315 * 95.41723 * 9 7 5 11 11 H 1.48501 * 109.47380 * 215.41947 * 9 7 5 12 12 H 1.48504 * 109.46971 * 335.41784 * 9 7 5 13 13 C 1.40625 * 120.06029 * 359.97438 * 4 3 2 14 14 C 1.38164 * 119.57643 * 0.02562 * 13 4 3 15 15 N 1.38092 * 133.27234 * 179.97438 * 14 13 4 16 16 H 0.97006 * 125.58562 * 0.03224 * 15 14 13 17 17 C 1.36655 * 108.82788 * 179.75382 * 15 14 13 18 18 C 1.34727 * 109.70679 * 0.43814 * 17 15 14 19 19 C 1.40476 * 119.92621 * 179.97438 * 2 1 3 20 20 H 1.08995 * 109.46742 * 269.99632 * 1 2 3 21 21 H 1.08993 * 109.47355 * 30.00013 * 1 2 3 22 22 H 1.09001 * 109.46934 * 150.00213 * 1 2 3 23 23 H 1.08004 * 119.82742 * 0.02562 * 3 2 1 24 24 H 0.96995 * 119.99636 * 179.97438 * 8 7 5 25 25 H 1.08001 * 120.21315 * 179.97438 * 13 4 3 26 26 H 1.07998 * 125.15071 * 180.25997 * 17 15 14 27 27 H 1.07992 * 126.03955 * 179.83182 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1842 1.1766 0.0000 4 6 3.5963 1.1869 -0.0005 5 6 4.2920 2.4136 0.0000 6 1 3.8534 3.2832 -0.4666 7 6 5.5500 2.5040 0.6050 8 7 6.3473 3.4997 0.3114 9 14 6.0921 1.2039 1.8318 10 1 6.9037 0.1737 1.1351 11 1 6.9077 1.8388 2.8981 12 1 4.8959 0.5655 2.4374 13 6 4.3096 -0.0251 -0.0005 14 6 3.6198 -1.2222 -0.0006 15 7 4.0185 -2.5444 -0.0010 16 1 4.9368 -2.8571 -0.0010 17 6 2.9075 -3.3400 0.0048 18 6 1.7996 -2.5734 -0.0007 19 6 2.2078 -1.2175 0.0005 20 1 -0.3632 -0.0001 1.0276 21 1 -0.3634 0.8899 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6401 2.1096 0.0004 24 1 7.2194 3.5626 0.7312 25 1 5.3896 -0.0201 -0.0014 26 1 2.9161 -4.4200 0.0099 27 1 0.7803 -2.9299 -0.0006 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259792908.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:36 Heat of formation + Delta-G solvation = 39.271192 kcal Electronic energy + Delta-G solvation = -12264.196596 eV Core-core repulsion = 10179.569900 eV Total energy + Delta-G solvation = -2084.626695 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.19650 -36.28592 -33.70083 -31.85928 -29.25449 -28.74031 -26.15735 -24.31983 -21.09575 -20.29609 -19.56223 -17.20522 -16.57107 -15.08544 -14.91575 -13.87810 -13.58982 -13.17335 -12.86692 -12.52696 -12.45002 -12.12488 -11.65835 -11.38014 -11.00053 -10.77690 -10.42158 -10.02881 -9.87873 -9.53363 -9.04635 -8.54347 -7.16844 -6.93127 -6.67060 -4.39807 2.26891 2.84202 3.12702 3.26924 3.35522 3.67908 4.03459 4.07882 4.58589 5.43313 5.67460 5.76851 5.92971 6.21212 6.28550 6.31449 6.45636 6.57384 6.66889 6.82844 7.03030 7.12166 7.22783 7.68568 7.76313 7.90713 7.92302 8.17488 8.40564 8.48129 8.73930 8.84709 10.09105 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.038041 B = 0.013624 C = 0.010712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.869953 B = 2054.681312 C = 2613.270174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.030 4.030 3 C -0.188 4.188 4 C 0.114 3.886 5 C -0.441 4.441 6 H 0.092 0.908 7 C 0.084 3.916 8 N -0.810 5.810 9 Si 0.918 3.082 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.244 1.244 13 C -0.290 4.290 14 C 0.149 3.851 15 N -0.608 5.608 16 H 0.404 0.596 17 C -0.022 4.022 18 C -0.179 4.179 19 C -0.198 4.198 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.104 0.896 24 H 0.284 0.716 25 H 0.097 0.903 26 H 0.149 0.851 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 -8.212 1.115 9.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.031 4.031 3 C -0.208 4.208 4 C 0.110 3.890 5 C -0.469 4.469 6 H 0.110 0.890 7 C -0.134 4.134 8 N -0.434 5.434 9 Si 0.746 3.254 10 H -0.203 1.203 11 H -0.223 1.223 12 H -0.167 1.167 13 C -0.314 4.314 14 C 0.042 3.958 15 N -0.211 5.211 16 H 0.238 0.762 17 C -0.147 4.147 18 C -0.205 4.205 19 C -0.202 4.202 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.122 0.878 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.166 0.834 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.908 -8.095 1.116 9.058 hybrid contribution 0.971 -0.685 0.502 1.290 sum -2.937 -8.780 1.618 9.399 Atomic orbital electron populations 1.20654 0.93195 1.01259 1.00971 1.18793 0.93877 0.91820 0.98627 1.20632 0.94079 0.95772 1.10281 1.17360 0.91384 0.91871 0.88374 1.19406 0.99838 0.96539 1.31157 0.88982 1.26168 0.94947 0.95893 0.96416 1.69732 1.07974 1.29937 1.35768 0.86177 0.79619 0.79914 0.79737 1.20303 1.22258 1.16749 1.19704 0.97284 0.89592 1.24802 1.18184 0.93712 0.83760 1.00128 1.41748 1.07386 1.05022 1.66992 0.76159 1.21346 0.85968 0.95317 1.12035 1.20396 0.96790 0.92324 1.10952 1.17641 0.91926 0.92575 1.18011 0.92392 0.92534 0.92602 0.87808 0.90543 0.88572 0.83392 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.91 36.01 0.36 -1.42 15 2 C -0.03 -0.66 5.87 -104.67 -0.61 -1.28 15 3 C -0.19 -4.47 9.32 -39.34 -0.37 -4.84 15 4 C 0.11 2.98 5.11 -106.81 -0.55 2.43 15 5 C -0.44 -12.06 9.54 -37.91 -0.36 -12.42 15 6 H 0.09 2.60 8.06 -52.49 -0.42 2.18 15 7 C 0.08 2.25 5.39 -17.34 -0.09 2.16 15 8 N -0.81 -21.82 13.93 55.54 0.77 -21.05 15 9 Si 0.92 21.61 24.51 -169.99 -4.17 17.44 15 10 H -0.28 -6.34 6.70 56.52 0.38 -5.96 15 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 12 H -0.24 -5.99 6.87 56.52 0.39 -5.60 15 13 C -0.29 -7.34 7.17 -38.71 -0.28 -7.62 15 14 C 0.15 3.48 7.24 -83.95 -0.61 2.87 15 15 N -0.61 -11.63 6.15 -10.58 -0.07 -11.70 15 16 H 0.40 6.47 8.96 -40.82 -0.37 6.10 15 17 C -0.02 -0.39 11.84 -16.65 -0.20 -0.58 15 18 C -0.18 -3.39 10.42 -39.54 -0.41 -3.81 15 19 C -0.20 -4.45 6.01 -106.65 -0.64 -5.09 15 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.06 0.88 8.08 -51.93 -0.42 0.46 15 22 H 0.05 0.87 7.82 -51.93 -0.41 0.47 15 23 H 0.10 2.29 8.06 -52.48 -0.42 1.86 15 24 H 0.28 6.95 8.30 -40.82 -0.34 6.61 15 25 H 0.10 2.43 4.73 -52.49 -0.25 2.18 15 26 H 0.15 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.12 1.99 8.04 -52.49 -0.42 1.57 15 LS Contribution 231.32 15.07 3.49 3.49 Total: -1.00 -29.36 231.32 -6.45 -35.81 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -2.72 Total: 5.60 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -3.76 Total: -29.59 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.71 Total: -32.74 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.17 Total: 17.44 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.36 -6.45 -35.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792908.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.081 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds