Wall clock time and date at job start Mon Mar 30 2020 01:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35760 * 119.92259 * 2 1 4 4 C 1.41214 * 120.33851 * 180.02562 * 3 2 1 5 5 C 1.41022 * 119.97242 * 180.02562 * 4 3 2 6 6 H 1.07997 * 119.99866 * 330.01709 * 5 4 3 7 7 C 1.39887 * 120.00255 * 150.01789 * 5 4 3 8 8 N 1.30885 * 119.99895 * 161.70526 * 7 5 4 9 9 Si 1.86797 * 120.00076 * 341.70456 * 7 5 4 10 10 H 1.48496 * 109.47315 * 95.41723 * 9 7 5 11 11 H 1.48501 * 109.47380 * 215.41947 * 9 7 5 12 12 H 1.48504 * 109.46971 * 335.41784 * 9 7 5 13 13 C 1.40625 * 120.06029 * 359.97438 * 4 3 2 14 14 C 1.38164 * 119.57643 * 0.02562 * 13 4 3 15 15 N 1.38092 * 133.27234 * 179.97438 * 14 13 4 16 16 H 0.97006 * 125.58562 * 0.03224 * 15 14 13 17 17 C 1.36655 * 108.82788 * 179.75382 * 15 14 13 18 18 C 1.34727 * 109.70679 * 0.43814 * 17 15 14 19 19 C 1.40476 * 119.92621 * 179.97438 * 2 1 3 20 20 H 1.08995 * 109.46742 * 269.99632 * 1 2 3 21 21 H 1.08993 * 109.47355 * 30.00013 * 1 2 3 22 22 H 1.09001 * 109.46934 * 150.00213 * 1 2 3 23 23 H 1.08004 * 119.82742 * 0.02562 * 3 2 1 24 24 H 0.96995 * 119.99636 * 179.97438 * 8 7 5 25 25 H 1.08001 * 120.21315 * 179.97438 * 13 4 3 26 26 H 1.07998 * 125.15071 * 180.25997 * 17 15 14 27 27 H 1.07992 * 126.03955 * 179.83182 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1842 1.1766 0.0000 4 6 3.5963 1.1869 -0.0005 5 6 4.2920 2.4136 0.0000 6 1 3.8534 3.2832 -0.4666 7 6 5.5500 2.5040 0.6050 8 7 6.3473 3.4997 0.3114 9 14 6.0921 1.2039 1.8318 10 1 6.9037 0.1737 1.1351 11 1 6.9077 1.8388 2.8981 12 1 4.8959 0.5655 2.4374 13 6 4.3096 -0.0251 -0.0005 14 6 3.6198 -1.2222 -0.0006 15 7 4.0185 -2.5444 -0.0010 16 1 4.9368 -2.8571 -0.0010 17 6 2.9075 -3.3400 0.0048 18 6 1.7996 -2.5734 -0.0007 19 6 2.2078 -1.2175 0.0005 20 1 -0.3632 -0.0001 1.0276 21 1 -0.3634 0.8899 -0.5138 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6401 2.1096 0.0004 24 1 7.2194 3.5626 0.7312 25 1 5.3896 -0.0201 -0.0014 26 1 2.9161 -4.4200 0.0099 27 1 0.7803 -2.9299 -0.0006 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259792908.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:36 Heat of formation + Delta-G solvation = 20.804526 kcal Electronic energy + Delta-G solvation = -12264.997370 eV Core-core repulsion = 10179.569900 eV Total energy + Delta-G solvation = -2085.427470 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.83390 -38.04181 -35.55266 -33.64129 -30.80024 -30.51355 -27.82466 -26.09292 -22.78597 -22.09270 -21.10783 -19.07615 -18.29466 -16.85529 -16.73072 -15.63528 -15.20876 -14.88740 -14.65618 -14.13714 -13.90384 -13.60291 -13.48446 -12.92990 -12.72329 -12.59281 -12.18031 -11.90046 -11.69657 -11.37200 -10.90869 -10.19936 -8.94807 -8.90110 -8.34906 -6.40474 0.55477 0.99677 1.21259 1.40119 1.45662 2.06295 2.14626 2.57150 2.71270 3.53789 4.14266 4.39643 4.51196 4.68101 4.69438 4.82576 4.96782 4.97575 5.09006 5.19344 5.26439 5.41649 5.54270 5.87156 6.00151 6.10040 6.21005 6.31734 6.48393 6.80168 6.89166 7.04524 8.18088 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.038041 B = 0.013624 C = 0.010712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.869953 B = 2054.681312 C = 2613.270174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.032 4.032 3 C -0.214 4.214 4 C 0.091 3.909 5 C -0.479 4.479 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.851 5.851 9 Si 0.972 3.028 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.262 1.262 13 C -0.296 4.296 14 C 0.113 3.887 15 N -0.600 5.600 16 H 0.419 0.581 17 C 0.014 3.986 18 C -0.203 4.203 19 C -0.203 4.203 20 H 0.074 0.926 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.107 0.893 24 H 0.293 0.707 25 H 0.089 0.911 26 H 0.204 0.796 27 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.464 -11.968 1.617 13.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.032 4.032 3 C -0.234 4.234 4 C 0.088 3.912 5 C -0.509 4.509 6 H 0.079 0.921 7 C -0.164 4.164 8 N -0.478 5.478 9 Si 0.797 3.203 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.186 1.186 13 C -0.319 4.319 14 C 0.005 3.995 15 N -0.204 5.204 16 H 0.256 0.744 17 C -0.111 4.111 18 C -0.228 4.228 19 C -0.207 4.207 20 H 0.093 0.907 21 H 0.086 0.914 22 H 0.095 0.905 23 H 0.125 0.875 24 H 0.103 0.897 25 H 0.106 0.894 26 H 0.221 0.779 27 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.153 -11.858 1.612 13.030 hybrid contribution 1.189 0.191 0.280 1.236 sum -3.964 -11.668 1.892 12.467 Atomic orbital electron populations 1.20703 0.89518 1.02887 1.02509 1.19316 0.96652 0.90961 0.96314 1.20780 0.93463 0.97142 1.11972 1.17523 0.92663 0.91701 0.89352 1.19376 1.01250 0.96506 1.33793 0.92118 1.26751 0.94740 0.97563 0.97385 1.69754 1.08827 1.31651 1.37528 0.85356 0.78663 0.78068 0.78165 1.19285 1.20506 1.18592 1.19740 0.97049 0.90491 1.24664 1.18308 0.94545 0.84933 1.01700 1.41910 1.09119 1.03714 1.65695 0.74378 1.22277 0.84422 0.97516 1.06906 1.20794 0.99171 0.90469 1.12340 1.18247 0.91806 0.94518 1.16134 0.90692 0.91418 0.90528 0.87507 0.89712 0.89350 0.77895 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.09 9.91 71.24 0.71 -2.38 15 2 C -0.03 -1.34 5.87 -19.89 -0.12 -1.46 15 3 C -0.21 -10.38 9.32 22.43 0.21 -10.18 15 4 C 0.09 4.94 5.11 -21.28 -0.11 4.83 15 5 C -0.48 -28.00 9.54 23.35 0.22 -27.77 15 6 H 0.06 3.75 8.06 -2.91 -0.02 3.73 15 7 C 0.05 2.77 5.39 85.23 0.46 3.23 15 8 N -0.85 -48.09 13.93 21.82 0.30 -47.78 15 9 Si 0.97 45.69 24.51 68.60 1.68 47.37 15 10 H -0.27 -11.93 6.70 99.48 0.67 -11.26 15 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 12 H -0.26 -12.87 6.87 99.48 0.68 -12.18 15 13 C -0.30 -15.12 7.17 22.84 0.16 -14.95 15 14 C 0.11 5.08 7.24 38.87 0.28 5.36 15 15 N -0.60 -20.59 6.15 -187.40 -1.15 -21.74 15 16 H 0.42 11.78 8.96 -92.70 -0.83 10.94 15 17 C 0.01 0.39 11.84 83.14 0.98 1.37 15 18 C -0.20 -6.65 10.42 22.29 0.23 -6.42 15 19 C -0.20 -8.56 6.01 -21.18 -0.13 -8.68 15 20 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 21 H 0.07 1.94 8.08 -2.39 -0.02 1.92 15 22 H 0.08 2.06 7.82 -2.39 -0.02 2.04 15 23 H 0.11 4.91 8.06 -2.91 -0.02 4.89 15 24 H 0.29 14.85 8.30 -92.71 -0.77 14.08 15 25 H 0.09 4.53 4.73 -2.91 -0.01 4.51 15 26 H 0.20 3.58 8.06 -2.91 -0.02 3.56 15 27 H 0.16 4.05 8.04 -2.91 -0.02 4.03 15 Total: -1.00 -66.32 231.32 4.03 -62.29 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.29 Total: 16.92 kcal Atomic # 6 Polarization: -59.96 SS G_CDS: 2.91 Total: -57.05 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -0.85 Total: -69.53 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.68 Total: 47.37 kcal Total: -66.32 4.03 -62.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792908.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.096 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds