Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35206 * 119.67059 * 2 1 4 4 C 1.40256 * 120.31954 * 180.02562 * 3 2 1 5 5 C 1.36635 * 119.63965 * 359.97002 * 4 3 2 6 6 C 1.40241 * 119.40231 * 0.02562 * 5 4 3 7 7 C 1.40098 * 131.94503 * 179.68583 * 6 5 4 8 8 C 1.37794 * 107.81652 * 179.89084 * 7 6 5 9 9 C 1.40174 * 107.74337 * 0.39613 * 8 7 6 10 10 C 1.39698 * 125.97868 * 179.77728 * 9 8 7 11 11 H 1.08004 * 120.00264 * 206.80266 * 10 9 8 12 12 C 1.39778 * 120.00183 * 26.79992 * 10 9 8 13 13 N 1.31093 * 119.99767 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00313 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46842 * 90.00496 * 14 12 10 16 16 H 1.48498 * 109.47225 * 209.99959 * 14 12 10 17 17 H 1.48495 * 109.47183 * 330.00628 * 14 12 10 18 18 N 1.36770 * 119.67193 * 179.97438 * 2 1 3 19 19 H 1.08994 * 109.47363 * 95.79044 * 1 2 3 20 20 H 1.09010 * 109.47145 * 215.79372 * 1 2 3 21 21 H 1.09000 * 109.47570 * 335.78697 * 1 2 3 22 22 H 1.07999 * 119.83777 * 359.97438 * 3 2 1 23 23 H 1.07994 * 120.17651 * 180.02562 * 4 3 2 24 24 H 1.07999 * 120.29632 * 180.02562 * 5 4 3 25 25 H 1.08001 * 126.09125 * 359.97438 * 7 6 5 26 26 H 1.08007 * 126.13119 * 180.17292 * 8 7 6 27 27 H 0.97008 * 120.00377 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1762 1.1748 0.0000 4 6 3.5787 1.1907 -0.0005 5 6 4.2678 0.0108 -0.0004 6 6 3.5601 -1.1999 -0.0004 7 6 3.9871 -2.5342 -0.0060 8 6 2.8662 -3.3356 -0.0003 9 6 1.7422 -2.4980 -0.0004 10 6 0.4086 -2.9141 0.0000 11 1 -0.3557 -2.2782 -0.4219 12 6 0.0633 -4.1535 0.5463 13 7 0.9909 -4.9252 1.0588 14 14 -1.7198 -4.7102 0.5463 15 1 -2.0038 -5.4610 -0.7031 16 1 -1.9641 -5.5889 1.7182 17 1 -2.6089 -3.5234 0.6235 18 7 2.1840 -1.1884 0.0005 19 1 -0.3634 -0.1037 -1.0223 20 1 -0.3634 -0.8336 0.6011 21 1 -0.3634 0.9372 0.4215 22 1 1.6282 2.1054 -0.0004 23 1 4.1109 2.1303 -0.0001 24 1 5.3478 0.0107 -0.0004 25 1 5.0122 -2.8741 -0.0121 26 1 2.8555 -4.4156 0.0001 27 1 0.7513 -5.7852 1.4383 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259853108.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 58.140573 kcal Electronic energy + Delta-G solvation = -12416.913582 eV Core-core repulsion = 10333.105124 eV Total energy + Delta-G solvation = -2083.808458 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.42984 -35.50893 -33.51690 -32.48329 -28.98171 -28.02836 -26.83515 -23.92840 -21.24924 -20.43199 -19.28038 -17.39007 -15.40877 -15.11111 -14.55654 -14.25361 -14.10955 -13.25905 -12.60794 -12.29846 -12.18275 -11.58593 -11.37372 -11.29203 -11.21159 -10.67064 -10.51998 -10.28539 -10.04470 -9.63098 -9.14354 -8.91721 -7.03989 -6.66628 -6.29082 -4.09581 2.05078 2.62195 3.06057 3.07999 3.11233 3.90417 4.26136 4.32152 4.76458 5.26394 5.50215 5.78552 5.95173 6.10847 6.15412 6.21440 6.39643 6.62465 6.79072 7.07434 7.11802 7.21375 7.30104 7.41349 7.67606 7.78716 7.97466 8.28379 8.62662 8.70357 8.91942 9.18896 10.33094 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.045208 B = 0.012502 C = 0.009963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.214124 B = 2239.047077 C = 2809.631168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.100 3.900 3 C -0.185 4.185 4 C -0.197 4.197 5 C -0.063 4.063 6 C -0.071 4.071 7 C -0.178 4.178 8 C -0.202 4.202 9 C 0.199 3.801 10 C -0.461 4.461 11 H 0.082 0.918 12 C 0.075 3.925 13 N -0.808 5.808 14 Si 0.919 3.081 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.264 1.264 18 N -0.379 5.379 19 H 0.067 0.933 20 H 0.095 0.905 21 H 0.064 0.936 22 H 0.118 0.882 23 H 0.106 0.894 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.143 0.857 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 4.733 -0.912 4.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.001 4.001 3 C -0.207 4.207 4 C -0.216 4.216 5 C -0.082 4.082 6 C -0.169 4.169 7 C -0.203 4.203 8 C -0.223 4.223 9 C 0.090 3.910 10 C -0.496 4.496 11 H 0.100 0.900 12 C -0.142 4.142 13 N -0.436 5.436 14 Si 0.744 3.256 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.188 1.188 18 N -0.051 5.051 19 H 0.086 0.914 20 H 0.114 0.886 21 H 0.083 0.917 22 H 0.136 0.864 23 H 0.124 0.876 24 H 0.132 0.868 25 H 0.132 0.868 26 H 0.161 0.839 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.243 4.673 -0.797 4.901 hybrid contribution -0.636 -0.211 0.073 0.674 sum -1.879 4.462 -0.724 4.896 Atomic orbital electron populations 1.21070 0.90051 1.03514 1.02944 1.20039 0.93977 0.85026 1.01105 1.19996 0.94512 0.95231 1.10971 1.20350 0.93680 0.96746 1.10854 1.20229 0.98210 0.90712 0.99077 1.18328 0.82549 0.94467 1.21540 1.20790 0.97791 0.90615 1.11143 1.21176 0.89743 0.98816 1.12587 1.18258 0.94753 0.77832 1.00171 1.18515 0.91626 1.02627 1.36833 0.90049 1.25650 0.99509 0.95789 0.93235 1.69906 1.34129 1.09661 1.29869 0.86136 0.81765 0.79213 0.78502 1.19487 1.20254 1.18842 1.41858 1.06235 1.04624 1.52380 0.91402 0.88649 0.91683 0.86433 0.87580 0.86810 0.86775 0.83929 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.61 36.00 0.31 -1.94 15 2 C 0.10 2.24 6.79 -81.47 -0.55 1.69 15 3 C -0.19 -3.70 9.58 -39.90 -0.38 -4.09 15 4 C -0.20 -3.88 10.09 -39.40 -0.40 -4.28 15 5 C -0.06 -1.35 10.10 -39.41 -0.40 -1.74 15 6 C -0.07 -1.76 6.73 -83.82 -0.56 -2.32 15 7 C -0.18 -4.43 10.91 -39.05 -0.43 -4.86 15 8 C -0.20 -5.47 9.54 -39.02 -0.37 -5.84 15 9 C 0.20 5.43 6.54 -83.71 -0.55 4.89 15 10 C -0.46 -12.06 7.68 -38.46 -0.30 -12.35 15 11 H 0.08 1.99 5.62 -52.48 -0.30 1.70 15 12 C 0.07 1.87 5.46 -17.29 -0.09 1.77 15 13 N -0.81 -21.05 10.94 55.54 0.61 -20.44 15 14 Si 0.92 18.67 29.56 -169.99 -5.03 13.64 15 15 H -0.27 -5.41 7.11 56.52 0.40 -5.00 15 16 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 17 H -0.26 -5.23 7.11 56.52 0.40 -4.83 15 18 N -0.38 -9.72 2.98 -53.99 -0.16 -9.88 15 19 H 0.07 1.21 8.10 -51.93 -0.42 0.79 15 20 H 0.09 1.98 5.71 -51.92 -0.30 1.68 15 21 H 0.06 1.01 8.00 -51.93 -0.42 0.59 15 22 H 0.12 1.95 8.02 -52.49 -0.42 1.53 15 23 H 0.11 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.11 2.07 8.06 -52.49 -0.42 1.65 15 25 H 0.11 2.49 8.06 -52.49 -0.42 2.07 15 26 H 0.14 3.92 6.63 -52.48 -0.35 3.57 15 27 H 0.28 6.60 8.30 -40.82 -0.34 6.26 15 LS Contribution 231.39 15.07 3.49 3.49 Total: -1.00 -28.68 231.39 -7.41 -36.09 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -2.60 Total: 6.17 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: -3.72 Total: -29.07 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.45 Total: -30.32 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.68 -7.41 -36.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853108.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.233 kcal (2) G-P(sol) polarization free energy of solvation -28.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds