Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35206 * 119.67059 * 2 1 4 4 C 1.40256 * 120.31954 * 180.02562 * 3 2 1 5 5 C 1.36635 * 119.63965 * 359.97002 * 4 3 2 6 6 C 1.40241 * 119.40231 * 0.02562 * 5 4 3 7 7 C 1.40098 * 131.94503 * 179.68583 * 6 5 4 8 8 C 1.37794 * 107.81652 * 179.89084 * 7 6 5 9 9 C 1.40174 * 107.74337 * 0.39613 * 8 7 6 10 10 C 1.39698 * 125.97868 * 179.77728 * 9 8 7 11 11 H 1.08004 * 120.00264 * 206.80266 * 10 9 8 12 12 C 1.39778 * 120.00183 * 26.79992 * 10 9 8 13 13 N 1.31093 * 119.99767 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00313 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46842 * 90.00496 * 14 12 10 16 16 H 1.48498 * 109.47225 * 209.99959 * 14 12 10 17 17 H 1.48495 * 109.47183 * 330.00628 * 14 12 10 18 18 N 1.36770 * 119.67193 * 179.97438 * 2 1 3 19 19 H 1.08994 * 109.47363 * 95.79044 * 1 2 3 20 20 H 1.09010 * 109.47145 * 215.79372 * 1 2 3 21 21 H 1.09000 * 109.47570 * 335.78697 * 1 2 3 22 22 H 1.07999 * 119.83777 * 359.97438 * 3 2 1 23 23 H 1.07994 * 120.17651 * 180.02562 * 4 3 2 24 24 H 1.07999 * 120.29632 * 180.02562 * 5 4 3 25 25 H 1.08001 * 126.09125 * 359.97438 * 7 6 5 26 26 H 1.08007 * 126.13119 * 180.17292 * 8 7 6 27 27 H 0.97008 * 120.00377 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1762 1.1748 0.0000 4 6 3.5787 1.1907 -0.0005 5 6 4.2678 0.0108 -0.0004 6 6 3.5601 -1.1999 -0.0004 7 6 3.9871 -2.5342 -0.0060 8 6 2.8662 -3.3356 -0.0003 9 6 1.7422 -2.4980 -0.0004 10 6 0.4086 -2.9141 0.0000 11 1 -0.3557 -2.2782 -0.4219 12 6 0.0633 -4.1535 0.5463 13 7 0.9909 -4.9252 1.0588 14 14 -1.7198 -4.7102 0.5463 15 1 -2.0038 -5.4610 -0.7031 16 1 -1.9641 -5.5889 1.7182 17 1 -2.6089 -3.5234 0.6235 18 7 2.1840 -1.1884 0.0005 19 1 -0.3634 -0.1037 -1.0223 20 1 -0.3634 -0.8336 0.6011 21 1 -0.3634 0.9372 0.4215 22 1 1.6282 2.1054 -0.0004 23 1 4.1109 2.1303 -0.0001 24 1 5.3478 0.0107 -0.0004 25 1 5.0122 -2.8741 -0.0121 26 1 2.8555 -4.4156 0.0001 27 1 0.7513 -5.7852 1.4383 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259853108.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 42.877965 kcal Electronic energy + Delta-G solvation = -12417.575418 eV Core-core repulsion = 10333.105124 eV Total energy + Delta-G solvation = -2084.470294 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 201.085 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.24813 -37.25133 -35.33065 -34.20219 -30.79603 -29.87023 -28.48764 -25.72228 -23.01332 -22.20150 -21.17447 -19.20694 -17.26631 -16.81578 -16.22013 -15.91019 -15.86154 -14.94928 -14.30952 -14.03797 -13.76398 -13.31760 -13.12335 -12.93469 -12.89128 -12.30619 -12.24252 -11.94518 -11.77290 -11.41293 -10.96057 -10.69139 -8.93229 -8.51866 -8.12919 -6.02111 0.35791 0.88306 1.40916 1.46007 1.55029 2.20227 2.41199 2.52581 2.98529 3.34947 3.91674 4.26018 4.47347 4.52618 4.56211 4.73047 4.76427 4.95190 5.10464 5.28090 5.37723 5.47812 5.60007 5.67263 5.87117 5.90278 6.01917 6.46397 6.70847 6.83055 7.01226 7.31863 8.51367 Molecular weight = 201.08amu Principal moments of inertia in cm(-1) A = 0.045208 B = 0.012502 C = 0.009963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.214124 B = 2239.047077 C = 2809.631168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.065 3.935 3 C -0.178 4.178 4 C -0.168 4.168 5 C -0.091 4.091 6 C -0.076 4.076 7 C -0.207 4.207 8 C -0.236 4.236 9 C 0.159 3.841 10 C -0.485 4.485 11 H 0.090 0.910 12 C 0.027 3.973 13 N -0.847 5.847 14 Si 0.993 3.007 15 H -0.264 1.264 16 H -0.272 1.272 17 H -0.253 1.253 18 N -0.389 5.389 19 H 0.074 0.926 20 H 0.071 0.929 21 H 0.105 0.895 22 H 0.163 0.837 23 H 0.153 0.847 24 H 0.144 0.856 25 H 0.134 0.866 26 H 0.123 0.877 27 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.859 7.634 -0.996 7.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.037 4.037 3 C -0.199 4.199 4 C -0.187 4.187 5 C -0.110 4.110 6 C -0.176 4.176 7 C -0.232 4.232 8 C -0.257 4.257 9 C 0.050 3.950 10 C -0.520 4.520 11 H 0.108 0.892 12 C -0.185 4.185 13 N -0.476 5.476 14 Si 0.814 3.186 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.177 1.177 18 N -0.060 5.060 19 H 0.093 0.907 20 H 0.089 0.911 21 H 0.123 0.877 22 H 0.180 0.820 23 H 0.170 0.830 24 H 0.162 0.838 25 H 0.152 0.848 26 H 0.141 0.859 27 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.960 7.589 -0.886 7.888 hybrid contribution -0.284 -0.818 0.089 0.870 sum -2.244 6.771 -0.797 7.178 Atomic orbital electron populations 1.21074 0.88098 1.04623 1.03228 1.20873 0.95911 0.84750 1.02120 1.20657 0.95134 0.95964 1.08161 1.21023 0.93897 0.97966 1.05862 1.20643 0.99968 0.89874 1.00540 1.18965 0.82924 0.95680 1.19988 1.21000 0.98250 0.91015 1.12961 1.21104 0.91247 0.98244 1.15127 1.18534 0.95326 0.78898 1.02210 1.18828 0.91606 1.03688 1.37863 0.89248 1.26655 1.04081 0.95437 0.92372 1.70025 1.36409 1.10208 1.30964 0.85025 0.76023 0.78932 0.78619 1.18906 1.19725 1.17672 1.42123 1.06847 1.05206 1.51819 0.90747 0.91060 0.87682 0.81987 0.82982 0.83801 0.84846 0.85938 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.07 8.61 71.23 0.61 -3.45 15 2 C 0.06 2.76 6.79 41.09 0.28 3.04 15 3 C -0.18 -6.28 9.58 22.06 0.21 -6.07 15 4 C -0.17 -5.77 10.09 22.39 0.23 -5.55 15 5 C -0.09 -3.64 10.10 22.38 0.23 -3.41 15 6 C -0.08 -3.76 6.73 39.17 0.26 -3.50 15 7 C -0.21 -10.72 10.91 22.62 0.25 -10.47 15 8 C -0.24 -13.56 9.54 22.63 0.22 -13.35 15 9 C 0.16 9.07 6.54 38.96 0.25 9.33 15 10 C -0.49 -26.30 7.68 23.00 0.18 -26.13 15 11 H 0.09 4.49 5.62 -2.91 -0.02 4.47 15 12 C 0.03 1.37 5.46 85.18 0.47 1.84 15 13 N -0.85 -46.43 10.94 21.81 0.24 -46.20 15 14 Si 0.99 38.89 29.56 68.60 2.03 40.91 15 15 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 16 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 17 H -0.25 -9.33 7.11 99.48 0.71 -8.63 15 18 N -0.39 -20.06 2.98 -324.73 -0.97 -21.02 15 19 H 0.07 2.52 8.10 -2.39 -0.02 2.51 15 20 H 0.07 2.92 5.71 -2.38 -0.01 2.91 15 21 H 0.10 2.83 8.00 -2.39 -0.02 2.81 15 22 H 0.16 4.27 8.02 -2.91 -0.02 4.25 15 23 H 0.15 3.90 8.06 -2.91 -0.02 3.88 15 24 H 0.14 4.75 8.06 -2.91 -0.02 4.72 15 25 H 0.13 6.04 8.06 -2.91 -0.02 6.02 15 26 H 0.12 7.32 6.63 -2.91 -0.02 7.30 15 27 H 0.28 14.05 8.30 -92.70 -0.77 13.28 15 Total: -1.00 -65.07 231.39 5.65 -59.43 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 1.17 Total: 24.60 kcal Atomic # 6 Polarization: -60.90 SS G_CDS: 3.18 Total: -57.72 kcal Atomic # 7 Polarization: -66.49 SS G_CDS: -0.73 Total: -67.22 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.91 kcal Total: -65.07 5.65 -59.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853108.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.303 kcal (2) G-P(sol) polarization free energy of solvation -65.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds