Wall clock time and date at job start Mon Mar 30 2020 02:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.39460 * 111.00150 * 2 1 4 4 C 1.55075 * 110.08739 * 193.47301 * 3 2 1 5 5 S 1.79575 * 109.78799 * 288.47045 * 4 3 2 6 6 C 1.82350 * 106.38347 * 87.88669 * 5 4 3 7 7 C 1.54170 * 110.19711 * 319.35226 * 6 5 4 8 8 C 1.46839 * 111.00330 * 132.30289 * 2 1 3 9 9 H 1.09005 * 110.41637 * 253.20761 * 8 2 1 10 10 C 1.50695 * 110.41776 * 15.53906 * 8 2 1 11 11 H 1.08002 * 120.00159 * 3.37993 * 10 8 2 12 12 C 1.37874 * 119.99961 * 183.38298 * 10 8 2 13 13 N 1.31516 * 119.99969 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 120.00170 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47049 * 59.99517 * 14 12 10 16 16 H 1.48502 * 109.46812 * 299.99842 * 14 12 10 17 17 H 1.48489 * 109.47315 * 179.97438 * 14 12 10 18 18 H 1.09007 * 109.47007 * 278.84295 * 1 2 3 19 19 H 1.08997 * 109.47840 * 38.84236 * 1 2 3 20 20 H 1.08999 * 109.47114 * 158.85019 * 1 2 3 21 21 H 1.09009 * 109.36600 * 313.65625 * 3 2 1 22 22 H 1.08999 * 109.37363 * 73.27955 * 3 2 1 23 23 H 1.08997 * 109.42200 * 48.56673 * 4 3 2 24 24 H 1.08995 * 109.42086 * 168.43879 * 4 3 2 25 25 H 1.09007 * 109.35482 * 79.68711 * 6 5 4 26 26 H 1.08993 * 109.36009 * 199.40794 * 6 5 4 27 27 H 1.09003 * 109.62864 * 201.65351 * 7 6 5 28 28 H 1.09002 * 109.45800 * 81.17884 * 7 6 5 29 29 H 0.96993 * 120.00045 * 0.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9687 1.3020 0.0000 4 6 3.4819 1.2916 -0.3393 5 16 4.4104 0.6202 1.0434 6 6 4.4599 -1.1864 0.8010 7 6 3.0932 -1.6938 0.2995 8 6 1.9952 -0.9226 1.0139 9 1 2.4070 -0.3670 1.8564 10 6 0.9134 -1.8610 1.4829 11 1 -0.0671 -1.8235 1.0316 12 6 1.1753 -2.7675 2.4882 13 7 2.3694 -2.8135 3.0375 14 14 -0.1655 -3.9312 3.0692 15 1 -0.6148 -4.7753 1.9331 16 1 -1.3141 -3.1444 3.5858 17 1 0.3666 -4.7993 4.1500 18 1 -0.3633 0.1580 1.0155 19 1 -0.3635 0.8004 -0.6445 20 1 -0.3633 -0.9584 -0.3708 21 1 1.4355 1.8939 -0.7440 22 1 1.8221 1.7455 0.9848 23 1 3.6510 0.6757 -1.2225 24 1 3.8156 2.3099 -0.5384 25 1 5.2289 -1.4317 0.0684 26 1 4.6953 -1.6717 1.7481 27 1 2.9949 -2.7573 0.5176 28 1 3.0167 -1.5289 -0.7752 29 1 3.0657 -2.2095 2.7356 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260319441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:36 Heat of formation + Delta-G solvation = 12.592755 kcal Electronic energy + Delta-G solvation = -11927.900356 eV Core-core repulsion = 9977.560748 eV Total energy + Delta-G solvation = -1950.339608 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.08344 -33.75392 -31.41104 -30.33839 -26.46277 -25.10319 -22.90549 -21.44979 -19.79170 -16.95707 -15.54431 -15.20437 -14.75014 -14.33787 -13.85281 -13.44177 -12.65371 -12.51905 -12.20482 -11.64796 -11.37830 -10.96295 -10.84383 -10.75936 -10.52110 -10.20019 -10.10635 -9.91658 -9.05733 -8.47193 -8.37305 -7.21169 -6.89412 -6.34931 -4.08931 2.29794 3.25757 3.42165 3.43121 3.61902 4.49992 4.89646 5.34968 5.37013 5.61574 5.71260 5.77211 5.86594 6.05699 6.16620 6.26209 6.34063 6.56553 6.77806 6.82666 6.89016 7.10382 7.60037 7.75012 8.15762 8.47670 8.63299 8.91159 9.63475 11.02047 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.014147 C = 0.011483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.734567 B = 1978.772354 C = 2437.842335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.575 5.575 3 C 0.091 3.909 4 C -0.083 4.083 5 S -0.283 6.283 6 C -0.073 4.073 7 C -0.111 4.111 8 C 0.204 3.796 9 H 0.040 0.960 10 C -0.609 4.609 11 H 0.066 0.934 12 C 0.022 3.978 13 N -0.911 5.911 14 Si 1.067 2.933 15 H -0.288 1.288 16 H -0.289 1.289 17 H -0.283 1.283 18 H 0.031 0.969 19 H 0.030 0.970 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.021 0.979 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 4.953 -5.578 7.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.300 5.300 3 C -0.042 4.042 4 C -0.232 4.232 5 S -0.056 6.056 6 C -0.221 4.221 7 C -0.151 4.151 8 C 0.098 3.902 9 H 0.057 0.943 10 C -0.647 4.647 11 H 0.084 0.916 12 C -0.183 4.183 13 N -0.547 5.547 14 Si 0.896 3.104 15 H -0.215 1.215 16 H -0.215 1.215 17 H -0.208 1.208 18 H 0.050 0.950 19 H 0.049 0.951 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.039 0.961 23 H 0.103 0.897 24 H 0.113 0.887 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.852 4.123 -4.083 5.865 hybrid contribution -0.345 0.850 -1.448 1.715 sum 0.507 4.973 -5.531 7.455 Atomic orbital electron populations 1.22089 0.87714 1.00054 0.99128 1.58098 1.07516 1.10613 1.53754 1.20908 0.93025 0.91263 0.98995 1.23611 0.98062 1.02665 0.98891 1.85842 1.71047 1.09117 1.39611 1.24027 1.01997 0.91321 1.04797 1.22343 0.91511 1.01823 0.99451 1.19596 0.93185 0.89580 0.87816 0.94265 1.22366 0.98619 1.21215 1.22534 0.91619 1.25744 1.00587 0.98201 0.93813 1.70777 1.03183 1.38411 1.42314 0.83561 0.74541 0.75985 0.76356 1.21487 1.21541 1.20801 0.95023 0.95092 0.91612 0.91810 0.96123 0.89704 0.88687 0.91681 0.88243 0.90617 0.92617 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.17 8.30 60.06 0.50 1.66 15 2 N -0.58 -12.36 3.58 -241.38 -0.86 -13.23 15 3 C 0.09 1.69 5.17 -6.55 -0.03 1.65 15 4 C -0.08 -1.43 6.02 38.25 0.23 -1.20 15 5 S -0.28 -5.56 20.05 -107.50 -2.16 -7.72 15 6 C -0.07 -1.50 6.35 37.77 0.24 -1.26 15 7 C -0.11 -2.55 4.56 -26.63 -0.12 -2.67 15 8 C 0.20 5.03 1.60 -69.41 -0.11 4.92 15 9 H 0.04 1.08 5.71 -51.46 -0.29 0.78 15 10 C -0.61 -16.44 7.34 -34.44 -0.25 -16.69 15 11 H 0.07 1.74 4.98 -52.49 -0.26 1.48 15 12 C 0.02 0.60 5.10 -17.82 -0.09 0.51 15 13 N -0.91 -26.57 13.25 55.43 0.73 -25.84 15 14 Si 1.07 24.64 29.90 -169.99 -5.08 19.56 15 15 H -0.29 -6.38 7.11 56.52 0.40 -5.98 15 16 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 18 H 0.03 0.68 7.39 -51.93 -0.38 0.30 15 19 H 0.03 0.52 7.56 -51.93 -0.39 0.13 15 20 H 0.07 1.38 6.72 -51.93 -0.35 1.03 15 21 H 0.06 1.03 7.59 -51.92 -0.39 0.63 15 22 H 0.02 0.42 8.12 -51.93 -0.42 0.00 15 23 H 0.08 1.45 7.89 -51.80 -0.41 1.04 15 24 H 0.09 1.37 8.14 -51.79 -0.42 0.95 15 25 H 0.06 1.17 8.14 -51.92 -0.42 0.75 15 26 H 0.10 2.17 6.91 -51.93 -0.36 1.81 15 27 H 0.08 1.91 7.05 -51.93 -0.37 1.55 15 28 H 0.06 1.23 7.45 -51.93 -0.39 0.84 15 29 H 0.27 7.85 4.88 -40.82 -0.20 7.65 15 LS Contribution 231.07 15.07 3.48 3.48 Total: -1.00 -28.69 231.07 -7.38 -36.07 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.85 Total: 0.74 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 0.36 Total: -13.07 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: -0.13 Total: -39.07 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Atomic # 16 Polarization: -5.56 SS G_CDS: -2.16 Total: -7.72 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.69 -7.38 -36.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.661 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds