Wall clock time and date at job start Mon Mar 30 2020 02:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.39460 * 111.00150 * 2 1 4 4 C 1.55075 * 110.08739 * 193.47301 * 3 2 1 5 5 S 1.79575 * 109.78799 * 288.47045 * 4 3 2 6 6 C 1.82350 * 106.38347 * 87.88669 * 5 4 3 7 7 C 1.54170 * 110.19711 * 319.35226 * 6 5 4 8 8 C 1.46839 * 111.00330 * 132.30289 * 2 1 3 9 9 H 1.09005 * 110.41637 * 253.20761 * 8 2 1 10 10 C 1.50695 * 110.41776 * 15.53906 * 8 2 1 11 11 H 1.08002 * 120.00159 * 3.37993 * 10 8 2 12 12 C 1.37874 * 119.99961 * 183.38298 * 10 8 2 13 13 N 1.31516 * 119.99969 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 120.00170 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47049 * 59.99517 * 14 12 10 16 16 H 1.48502 * 109.46812 * 299.99842 * 14 12 10 17 17 H 1.48489 * 109.47315 * 179.97438 * 14 12 10 18 18 H 1.09007 * 109.47007 * 278.84295 * 1 2 3 19 19 H 1.08997 * 109.47840 * 38.84236 * 1 2 3 20 20 H 1.08999 * 109.47114 * 158.85019 * 1 2 3 21 21 H 1.09009 * 109.36600 * 313.65625 * 3 2 1 22 22 H 1.08999 * 109.37363 * 73.27955 * 3 2 1 23 23 H 1.08997 * 109.42200 * 48.56673 * 4 3 2 24 24 H 1.08995 * 109.42086 * 168.43879 * 4 3 2 25 25 H 1.09007 * 109.35482 * 79.68711 * 6 5 4 26 26 H 1.08993 * 109.36009 * 199.40794 * 6 5 4 27 27 H 1.09003 * 109.62864 * 201.65351 * 7 6 5 28 28 H 1.09002 * 109.45800 * 81.17884 * 7 6 5 29 29 H 0.96993 * 120.00045 * 0.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9687 1.3020 0.0000 4 6 3.4819 1.2916 -0.3393 5 16 4.4104 0.6202 1.0434 6 6 4.4599 -1.1864 0.8010 7 6 3.0932 -1.6938 0.2995 8 6 1.9952 -0.9226 1.0139 9 1 2.4070 -0.3670 1.8564 10 6 0.9134 -1.8610 1.4829 11 1 -0.0671 -1.8235 1.0316 12 6 1.1753 -2.7675 2.4882 13 7 2.3694 -2.8135 3.0375 14 14 -0.1655 -3.9312 3.0692 15 1 -0.6148 -4.7753 1.9331 16 1 -1.3141 -3.1444 3.5858 17 1 0.3666 -4.7993 4.1500 18 1 -0.3633 0.1580 1.0155 19 1 -0.3635 0.8004 -0.6445 20 1 -0.3633 -0.9584 -0.3708 21 1 1.4355 1.8939 -0.7440 22 1 1.8221 1.7455 0.9848 23 1 3.6510 0.6757 -1.2225 24 1 3.8156 2.3099 -0.5384 25 1 5.2289 -1.4317 0.0684 26 1 4.6953 -1.6717 1.7481 27 1 2.9949 -2.7573 0.5176 28 1 3.0167 -1.5289 -0.7752 29 1 3.0657 -2.2095 2.7356 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260319441.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:36 Heat of formation + Delta-G solvation = -5.183589 kcal Electronic energy + Delta-G solvation = -11928.671196 eV Core-core repulsion = 9977.560748 eV Total energy + Delta-G solvation = -1951.110448 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.81488 -35.62491 -33.28253 -31.92585 -28.31128 -26.81330 -24.73242 -23.11943 -21.63081 -18.88335 -17.21150 -16.89737 -16.39598 -16.02415 -15.65201 -15.11736 -14.43598 -14.19346 -13.89966 -13.30987 -13.00409 -12.77200 -12.54381 -12.42571 -12.27550 -12.00441 -11.93165 -11.65613 -10.63199 -10.53174 -10.37692 -8.92702 -8.52863 -8.48791 -6.26296 0.77415 1.54432 1.61361 1.73704 1.79938 2.59091 3.24855 3.27943 3.89584 4.08939 4.13011 4.26777 4.32422 4.52516 4.64760 4.68174 4.79323 4.87803 4.96852 5.03348 5.14637 5.28163 5.66508 5.89228 6.13157 6.53502 6.63225 6.99598 7.54296 8.86106 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.042821 B = 0.014147 C = 0.011483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.734567 B = 1978.772354 C = 2437.842335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.577 5.577 3 C 0.085 3.915 4 C -0.072 4.072 5 S -0.305 6.305 6 C -0.067 4.067 7 C -0.099 4.099 8 C 0.205 3.795 9 H 0.010 0.990 10 C -0.619 4.619 11 H 0.068 0.932 12 C -0.027 4.027 13 N -0.939 5.939 14 Si 1.111 2.889 15 H -0.272 1.272 16 H -0.275 1.275 17 H -0.288 1.288 18 H 0.009 0.991 19 H 0.070 0.930 20 H 0.054 0.946 21 H 0.101 0.899 22 H 0.003 0.997 23 H 0.091 0.909 24 H 0.131 0.869 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 5.886 -7.015 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.301 5.301 3 C -0.047 4.047 4 C -0.220 4.220 5 S -0.078 6.078 6 C -0.216 4.216 7 C -0.139 4.139 8 C 0.098 3.902 9 H 0.028 0.972 10 C -0.657 4.657 11 H 0.086 0.914 12 C -0.227 4.227 13 N -0.577 5.577 14 Si 0.934 3.066 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.214 1.214 18 H 0.028 0.972 19 H 0.089 0.911 20 H 0.073 0.927 21 H 0.119 0.881 22 H 0.021 0.979 23 H 0.110 0.890 24 H 0.149 0.851 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.277 5.080 -5.542 7.523 hybrid contribution -0.190 0.654 -1.041 1.244 sum 0.087 5.734 -6.583 8.730 Atomic orbital electron populations 1.22058 0.87082 1.00967 0.98635 1.58144 1.08192 1.11757 1.52006 1.21087 0.94470 0.89944 0.99239 1.23710 0.96485 1.04483 0.97365 1.85931 1.71740 1.08145 1.41985 1.23867 1.01241 0.92114 1.04336 1.22093 0.92490 0.99669 0.99626 1.19383 0.93086 0.89854 0.87902 0.97226 1.22770 0.99405 1.21250 1.22306 0.91414 1.27036 1.01651 0.99783 0.94199 1.70862 1.03975 1.39298 1.43591 0.82992 0.72695 0.74620 0.76320 1.19712 1.20064 1.21400 0.97219 0.91134 0.92745 0.88100 0.97891 0.89034 0.85117 0.89040 0.90367 0.93763 0.91704 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.31 8.30 127.69 1.06 3.37 15 2 N -0.58 -23.79 3.58 -917.58 -3.29 -27.07 15 3 C 0.08 2.91 5.17 88.35 0.46 3.36 15 4 C -0.07 -2.24 6.02 72.69 0.44 -1.80 15 5 S -0.30 -11.64 20.05 -56.49 -1.13 -12.77 15 6 C -0.07 -2.75 6.35 72.38 0.46 -2.29 15 7 C -0.10 -4.52 4.56 30.66 0.14 -4.38 15 8 C 0.20 10.10 1.60 43.85 0.07 10.17 15 9 H 0.01 0.56 5.71 -2.68 -0.02 0.55 15 10 C -0.62 -33.64 7.34 25.60 0.19 -33.45 15 11 H 0.07 3.58 4.98 -2.91 -0.01 3.57 15 12 C -0.03 -1.53 5.10 84.65 0.43 -1.10 15 13 N -0.94 -56.14 13.25 21.45 0.28 -55.85 15 14 Si 1.11 49.73 29.90 68.60 2.05 51.78 15 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 16 H -0.28 -11.59 7.11 99.48 0.71 -10.88 15 17 H -0.29 -13.09 7.11 99.48 0.71 -12.38 15 18 H 0.01 0.39 7.39 -2.38 -0.02 0.38 15 19 H 0.07 2.15 7.56 -2.39 -0.02 2.13 15 20 H 0.05 2.20 6.72 -2.39 -0.02 2.18 15 21 H 0.10 2.78 7.59 -2.38 -0.02 2.76 15 22 H 0.00 0.12 8.12 -2.39 -0.02 0.10 15 23 H 0.09 2.79 7.89 -2.47 -0.02 2.77 15 24 H 0.13 3.18 8.14 -2.48 -0.02 3.16 15 25 H 0.09 3.19 8.14 -2.38 -0.02 3.17 15 26 H 0.08 3.51 6.91 -2.39 -0.02 3.49 15 27 H 0.04 2.28 7.05 -2.39 -0.02 2.26 15 28 H 0.06 2.79 7.45 -2.39 -0.02 2.78 15 29 H 0.27 15.82 4.88 -92.71 -0.45 15.37 15 Total: -1.00 -61.86 231.07 2.60 -59.26 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 1.44 Total: 10.77 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 3.24 Total: -26.11 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -3.00 Total: -82.93 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.05 Total: 51.78 kcal Atomic # 16 Polarization: -11.64 SS G_CDS: -1.13 Total: -12.77 kcal Total: -61.86 2.60 -59.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319441.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.074 kcal (2) G-P(sol) polarization free energy of solvation -61.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds