Wall clock time and date at job start Mon Mar 30 2020 02:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47318 * 270.00203 * 3 2 1 5 5 H 1.48495 * 109.47540 * 30.00729 * 3 2 1 6 6 H 1.48506 * 109.46909 * 150.00638 * 3 2 1 7 7 C 1.37877 * 119.99381 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99541 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00354 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46846 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.18795 * 304.37898 * 10 9 7 12 12 C 1.52575 * 109.22695 * 63.76511 * 10 9 7 13 13 C 1.53102 * 109.95374 * 190.99545 * 12 10 9 14 14 S 1.81739 * 108.84117 * 296.97150 * 13 12 10 15 15 C 1.81751 * 102.22279 * 53.26834 * 14 13 12 16 16 C 1.52586 * 109.22423 * 184.99890 * 10 9 7 17 17 H 1.09001 * 109.38828 * 48.85162 * 16 10 9 18 18 N 1.46896 * 109.38846 * 289.15423 * 16 10 9 19 19 H 0.97005 * 119.99799 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.46932 * 60.00296 * 9 7 2 21 21 H 1.09000 * 109.47188 * 299.99512 * 9 7 2 22 22 H 1.09000 * 109.39151 * 311.13902 * 12 10 9 23 23 H 1.09004 * 109.39609 * 70.84538 * 12 10 9 24 24 H 1.09003 * 109.57550 * 177.16316 * 13 12 10 25 25 H 1.08997 * 109.57619 * 56.78199 * 13 12 10 26 26 H 1.08999 * 109.57590 * 186.93240 * 15 14 13 27 27 H 1.08992 * 109.57373 * 66.53609 * 15 14 13 28 28 H 1.00904 * 110.99726 * 180.02562 * 18 16 10 29 29 H 1.00905 * 111.00349 * 303.94868 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9198 -3.5567 -0.8502 12 6 3.0557 -3.6302 1.2917 13 6 4.2309 -4.6068 1.1956 14 16 3.5790 -6.2938 1.0169 15 6 2.4560 -6.1241 -0.4021 16 6 1.4807 -4.9767 -0.1261 17 1 0.7668 -4.9033 -0.9466 18 7 0.7573 -5.2416 1.1247 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 3.4357 -2.6218 1.4557 23 1 2.4161 -3.9147 2.1273 24 1 4.8342 -4.5424 2.1011 25 1 4.8426 -4.3578 0.3285 26 1 1.8996 -7.0511 -0.5404 27 1 3.0331 -5.9047 -1.3003 28 1 0.2426 -6.1076 1.0683 29 1 1.3875 -5.2466 1.9128 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260549487.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:19 Heat of formation + Delta-G solvation = -19.594175 kcal Electronic energy + Delta-G solvation = -11492.679185 eV Core-core repulsion = 9540.943847 eV Total energy + Delta-G solvation = -1951.735338 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.91689 -33.18573 -32.10022 -29.45031 -28.52475 -25.20453 -22.62721 -21.55876 -18.84636 -17.05828 -16.10309 -15.10459 -14.62690 -14.42224 -13.83119 -13.63323 -13.01026 -12.69096 -12.27160 -12.24697 -11.75265 -11.16516 -10.98293 -10.73465 -10.52212 -10.01322 -9.77860 -9.55698 -9.20111 -8.92298 -8.33830 -8.16483 -7.53403 -5.95661 -3.97737 1.98874 2.71807 3.32474 3.39332 3.41351 4.47401 4.97053 5.13994 5.23545 5.30508 5.38340 5.42418 5.67663 5.74271 5.90120 5.95640 6.27351 6.43244 6.78874 6.99691 7.13789 7.64821 7.74222 7.91294 7.95325 8.10987 8.46277 9.09645 9.65297 11.15231 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.056832 B = 0.009528 C = 0.008647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.563096 B = 2937.982632 C = 3237.274273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.038 3.962 10 C -0.080 4.080 11 H 0.056 0.944 12 C -0.113 4.113 13 C -0.076 4.076 14 S -0.295 6.295 15 C -0.114 4.114 16 C 0.094 3.906 17 H 0.087 0.913 18 N -0.829 5.829 19 H 0.259 0.741 20 H 0.012 0.988 21 H 0.031 0.969 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.328 0.672 29 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.390 -10.114 0.987 11.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.071 0.929 9 C 0.001 3.999 10 C -0.099 4.099 11 H 0.074 0.926 12 C -0.152 4.152 13 C -0.224 4.224 14 S -0.069 6.069 15 C -0.265 4.265 16 C -0.020 4.020 17 H 0.105 0.895 18 N -0.360 5.360 19 H 0.069 0.931 20 H 0.031 0.969 21 H 0.050 0.950 22 H 0.109 0.891 23 H 0.091 0.909 24 H 0.115 0.885 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.088 -10.227 1.460 11.516 hybrid contribution 0.864 1.077 -0.798 1.595 sum 5.953 -9.149 0.662 10.936 Atomic orbital electron populations 1.69978 1.05977 1.26401 1.50787 1.24998 0.94773 0.99027 0.95531 0.86678 0.79863 0.83928 0.78000 1.20815 1.21282 1.19987 1.21287 0.92805 0.91264 1.50514 0.92858 1.19023 0.93219 0.89720 0.97945 1.21189 0.97780 0.94794 0.96171 0.92583 1.21773 0.94570 0.99372 0.99486 1.23617 1.01195 0.92633 1.04955 1.86504 1.57001 1.18882 1.44562 1.24554 0.99819 1.03942 0.98141 1.21670 0.93630 0.93121 0.93547 0.89476 1.59032 1.31849 1.40430 1.04714 0.93102 0.96936 0.95048 0.89123 0.90943 0.88521 0.90236 0.88830 0.89921 0.86009 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.29 55.43 0.74 -26.09 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 15 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.52 -14.31 8.22 -34.44 -0.28 -14.59 15 8 H 0.05 1.41 7.03 -52.48 -0.37 1.05 15 9 C 0.04 0.96 4.31 -27.88 -0.12 0.84 15 10 C -0.08 -1.58 1.71 -91.05 -0.16 -1.73 15 11 H 0.06 1.12 8.08 -51.93 -0.42 0.70 15 12 C -0.11 -2.02 4.80 -26.90 -0.13 -2.15 15 13 C -0.08 -1.13 6.45 37.21 0.24 -0.89 15 14 S -0.29 -4.28 21.07 -107.50 -2.26 -6.55 15 15 C -0.11 -1.60 6.14 37.21 0.23 -1.37 15 16 C 0.09 1.57 3.01 -67.88 -0.20 1.37 15 17 H 0.09 1.51 8.05 -51.93 -0.42 1.09 15 18 N -0.83 -13.44 8.77 -4.81 -0.04 -13.48 15 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 20 H 0.01 0.34 8.09 -51.93 -0.42 -0.08 15 21 H 0.03 0.87 8.03 -51.93 -0.42 0.45 15 22 H 0.09 1.79 6.57 -51.93 -0.34 1.45 15 23 H 0.07 1.31 6.00 -51.93 -0.31 1.00 15 24 H 0.10 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 26 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.33 4.52 9.03 -39.29 -0.35 4.17 15 29 H 0.35 5.55 5.42 -39.29 -0.21 5.34 15 LS Contribution 241.26 15.07 3.64 3.64 Total: -1.00 -29.17 241.26 -7.57 -36.74 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.09 Total: 6.26 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -0.52 Total: -16.99 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.69 Total: -39.57 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -2.26 Total: -6.55 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.17 -7.57 -36.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260549487.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.142 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds