Wall clock time and date at job start Mon Mar 30 2020 02:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 110.99872 * 2 1 4 4 C 1.46903 * 110.99853 * 123.95245 * 2 1 3 5 5 C 1.50700 * 108.84921 * 293.53401 * 4 2 1 6 6 H 1.08002 * 119.99737 * 263.94198 * 5 4 2 7 7 C 1.37871 * 119.99786 * 83.94739 * 5 4 2 8 8 N 1.31522 * 119.99737 * 191.82999 * 7 5 4 9 9 Si 1.86799 * 120.00500 * 11.55357 * 7 5 4 10 10 H 1.48497 * 109.47515 * 84.34585 * 9 7 5 11 11 H 1.48506 * 109.47446 * 204.34925 * 9 7 5 12 12 H 1.48501 * 109.46915 * 324.34717 * 9 7 5 13 13 C 1.52939 * 108.88609 * 174.95660 * 4 2 1 14 14 C 1.54835 * 109.13092 * 209.20788 * 13 4 2 15 15 S 1.83984 * 100.87801 * 41.42926 * 14 13 4 16 16 C 1.53715 * 108.88543 * 52.11043 * 4 2 1 17 17 H 1.08993 * 109.46920 * 275.28164 * 1 2 3 18 18 H 1.08998 * 109.46847 * 35.28573 * 1 2 3 19 19 H 1.09004 * 109.46818 * 155.27990 * 1 2 3 20 20 H 1.09000 * 109.47123 * 183.95392 * 3 2 1 21 21 H 1.09004 * 109.47398 * 303.95275 * 3 2 1 22 22 H 1.09001 * 109.47007 * 63.95306 * 3 2 1 23 23 H 0.96997 * 120.00002 * 179.72550 * 8 7 5 24 24 H 1.09008 * 109.60471 * 329.17960 * 13 4 2 25 25 H 1.09001 * 109.60574 * 89.31556 * 13 4 2 26 26 H 1.09004 * 111.11726 * 283.54058 * 14 13 4 27 27 H 1.09001 * 111.17316 * 159.34508 * 14 13 4 28 28 H 1.08997 * 110.33707 * 242.34887 * 16 4 2 29 29 H 1.08999 * 110.34220 * 4.49994 * 16 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6383 -0.0492 2.4142 6 1 2.3518 0.6160 2.8778 7 6 0.4007 -0.2427 2.9903 8 7 -0.0025 0.5460 3.9626 9 14 -0.7065 -1.6200 2.3849 10 1 -0.3353 -2.8879 3.0630 11 1 -2.1212 -1.2896 2.6929 12 1 -0.5432 -1.7774 0.9173 13 6 3.5186 -0.8411 1.0215 14 6 4.0139 -2.1506 1.6827 15 16 2.7395 -3.3402 1.0946 16 6 1.3399 -2.1563 1.1474 17 1 -0.3633 0.0946 1.0232 18 1 -0.3633 0.8389 -0.5936 19 1 -0.3633 -0.9335 -0.4298 20 1 3.0828 1.3432 -0.0709 21 1 1.5898 1.9163 -0.8525 22 1 1.7043 1.8723 0.9233 23 1 -0.8748 0.4124 4.3652 24 1 3.8061 -0.8319 -0.0299 25 1 3.9666 0.0139 1.5277 26 1 4.0042 -2.0698 2.7697 27 1 5.0045 -2.4247 1.3198 28 1 0.7601 -2.2953 2.0599 29 1 0.7028 -2.2809 0.2718 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260588242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:46 Heat of formation + Delta-G solvation = 71.970869 kcal Electronic energy + Delta-G solvation = -12261.673470 eV Core-core repulsion = 10313.908690 eV Total energy + Delta-G solvation = -1947.764780 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.48612 -32.87400 -32.38527 -29.69666 -27.04458 -25.17070 -24.11339 -22.09179 -18.77232 -16.90965 -16.58585 -15.45805 -14.76107 -14.08102 -13.66767 -13.28834 -12.81242 -12.72216 -12.24535 -11.78456 -11.42041 -11.35220 -10.87388 -10.71467 -10.54714 -10.03232 -9.92887 -9.69538 -9.30770 -8.77850 -8.45611 -7.19374 -7.08985 -6.30190 -4.38012 2.55749 2.96675 3.09933 3.19583 3.33660 4.13609 4.81063 5.10591 5.47304 5.61385 5.68185 5.85173 5.99579 6.05556 6.12391 6.28217 6.39698 6.44539 6.52926 6.65808 6.74424 6.77780 6.90049 7.44102 7.93787 8.06242 8.30332 8.67554 9.26034 10.77508 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.030964 B = 0.021487 C = 0.017562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.057784 B = 1302.787561 C = 1594.009521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.537 5.537 3 C 0.034 3.966 4 C 0.197 3.803 5 C -0.544 4.544 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.882 5.882 9 Si 0.861 3.139 10 H -0.289 1.289 11 H -0.305 1.305 12 H -0.223 1.223 13 C -0.095 4.095 14 C -0.051 4.051 15 S -0.337 6.337 16 C -0.058 4.058 17 H 0.048 0.952 18 H 0.048 0.952 19 H 0.059 0.941 20 H 0.053 0.947 21 H 0.044 0.956 22 H 0.045 0.955 23 H 0.267 0.733 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 -2.150 -6.158 7.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.261 5.261 3 C -0.115 4.115 4 C 0.108 3.892 5 C -0.583 4.583 6 H 0.097 0.903 7 C -0.131 4.131 8 N -0.518 5.518 9 Si 0.696 3.304 10 H -0.220 1.220 11 H -0.235 1.235 12 H -0.149 1.149 13 C -0.134 4.134 14 C -0.199 4.199 15 S -0.112 6.112 16 C -0.204 4.204 17 H 0.066 0.934 18 H 0.067 0.933 19 H 0.078 0.922 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.315 -3.466 -6.791 8.314 hybrid contribution -1.068 0.851 1.203 1.820 sum 2.247 -2.615 -5.589 6.566 Atomic orbital electron populations 1.22868 0.89948 0.99913 1.00909 1.62915 1.06624 1.13321 1.43215 1.22141 0.99128 0.90095 1.00091 1.19449 0.90721 0.88721 0.90303 1.21461 1.01289 1.27862 1.07675 0.90265 1.25338 0.97417 0.96022 0.94337 1.69909 1.20191 1.36575 1.25101 0.88005 0.78170 0.81464 0.82760 1.21966 1.23491 1.14876 1.22175 0.95518 0.95853 0.99884 1.24109 0.97547 0.94927 1.03347 1.87244 1.10296 1.25315 1.88394 1.25398 0.96201 0.96230 1.02568 0.93383 0.93319 0.92243 0.92854 0.93754 0.93670 0.92267 0.91448 0.90795 0.89210 0.88892 0.91045 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 7.74 60.07 0.47 0.71 15 2 N -0.54 -11.29 4.73 -236.36 -1.12 -12.40 15 3 C 0.03 0.66 8.91 60.06 0.53 1.19 15 4 C 0.20 4.37 0.60 -132.41 -0.08 4.30 15 5 C -0.54 -14.19 6.83 -34.44 -0.24 -14.42 15 6 H 0.08 2.26 7.73 -52.49 -0.41 1.86 15 7 C 0.07 1.99 4.55 -17.82 -0.08 1.91 15 8 N -0.88 -25.82 13.96 55.43 0.77 -25.04 15 9 Si 0.86 20.75 21.17 -169.99 -3.60 17.16 15 10 H -0.29 -7.22 6.93 56.52 0.39 -6.83 15 11 H -0.31 -7.50 7.11 56.52 0.40 -7.10 15 12 H -0.22 -4.82 2.28 56.52 0.13 -4.69 15 13 C -0.10 -1.84 4.02 -25.80 -0.10 -1.95 15 14 C -0.05 -0.92 7.51 38.12 0.29 -0.64 15 15 S -0.34 -6.91 23.22 -107.50 -2.50 -9.41 15 16 C -0.06 -1.29 4.06 37.53 0.15 -1.14 15 17 H 0.05 1.12 2.91 -51.93 -0.15 0.97 15 18 H 0.05 0.89 7.74 -51.93 -0.40 0.49 15 19 H 0.06 1.17 5.74 -51.93 -0.30 0.87 15 20 H 0.05 0.95 6.94 -51.93 -0.36 0.59 15 21 H 0.04 0.75 7.96 -51.93 -0.41 0.34 15 22 H 0.04 0.99 6.98 -51.93 -0.36 0.63 15 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 24 H 0.07 1.24 7.96 -51.92 -0.41 0.83 15 25 H 0.07 1.42 7.45 -51.93 -0.39 1.03 15 26 H 0.09 1.67 8.14 -51.93 -0.42 1.25 15 27 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 28 H 0.07 1.75 1.82 -51.93 -0.09 1.66 15 29 H 0.11 2.31 5.15 -51.93 -0.27 2.04 15 LS Contribution 216.60 15.07 3.26 3.26 Total: -1.00 -28.43 216.60 -6.05 -34.48 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -3.82 Total: 1.99 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 0.94 Total: -10.04 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.34 Total: -37.45 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -3.60 Total: 17.16 kcal Atomic # 16 Polarization: -6.91 SS G_CDS: -2.50 Total: -9.41 kcal Total LS contribution 3.26 Total: 3.26 kcal Total: -28.43 -6.05 -34.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260588242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.450 kcal (2) G-P(sol) polarization free energy of solvation -28.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds