Wall clock time and date at job start Mon Mar 30 2020 02:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46895 * 110.99872 * 2 1 4 4 C 1.46903 * 110.99853 * 123.95245 * 2 1 3 5 5 C 1.50700 * 108.84921 * 293.53401 * 4 2 1 6 6 H 1.08002 * 119.99737 * 263.94198 * 5 4 2 7 7 C 1.37871 * 119.99786 * 83.94739 * 5 4 2 8 8 N 1.31522 * 119.99737 * 191.82999 * 7 5 4 9 9 Si 1.86799 * 120.00500 * 11.55357 * 7 5 4 10 10 H 1.48497 * 109.47515 * 84.34585 * 9 7 5 11 11 H 1.48506 * 109.47446 * 204.34925 * 9 7 5 12 12 H 1.48501 * 109.46915 * 324.34717 * 9 7 5 13 13 C 1.52939 * 108.88609 * 174.95660 * 4 2 1 14 14 C 1.54835 * 109.13092 * 209.20788 * 13 4 2 15 15 S 1.83984 * 100.87801 * 41.42926 * 14 13 4 16 16 C 1.53715 * 108.88543 * 52.11043 * 4 2 1 17 17 H 1.08993 * 109.46920 * 275.28164 * 1 2 3 18 18 H 1.08998 * 109.46847 * 35.28573 * 1 2 3 19 19 H 1.09004 * 109.46818 * 155.27990 * 1 2 3 20 20 H 1.09000 * 109.47123 * 183.95392 * 3 2 1 21 21 H 1.09004 * 109.47398 * 303.95275 * 3 2 1 22 22 H 1.09001 * 109.47007 * 63.95306 * 3 2 1 23 23 H 0.96997 * 120.00002 * 179.72550 * 8 7 5 24 24 H 1.09008 * 109.60471 * 329.17960 * 13 4 2 25 25 H 1.09001 * 109.60574 * 89.31556 * 13 4 2 26 26 H 1.09004 * 111.11726 * 283.54058 * 14 13 4 27 27 H 1.09001 * 111.17316 * 159.34508 * 14 13 4 28 28 H 1.08997 * 110.33707 * 242.34887 * 16 4 2 29 29 H 1.08999 * 110.34220 * 4.49994 * 16 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6383 -0.0492 2.4142 6 1 2.3518 0.6160 2.8778 7 6 0.4007 -0.2427 2.9903 8 7 -0.0025 0.5460 3.9626 9 14 -0.7065 -1.6200 2.3849 10 1 -0.3353 -2.8879 3.0630 11 1 -2.1212 -1.2896 2.6929 12 1 -0.5432 -1.7774 0.9173 13 6 3.5186 -0.8411 1.0215 14 6 4.0139 -2.1506 1.6827 15 16 2.7395 -3.3402 1.0946 16 6 1.3399 -2.1563 1.1474 17 1 -0.3633 0.0946 1.0232 18 1 -0.3633 0.8389 -0.5936 19 1 -0.3633 -0.9335 -0.4298 20 1 3.0828 1.3432 -0.0709 21 1 1.5898 1.9163 -0.8525 22 1 1.7043 1.8723 0.9233 23 1 -0.8748 0.4124 4.3652 24 1 3.8061 -0.8319 -0.0299 25 1 3.9666 0.0139 1.5277 26 1 4.0042 -2.0698 2.7697 27 1 5.0045 -2.4247 1.3198 28 1 0.7601 -2.2953 2.0599 29 1 0.7028 -2.2809 0.2718 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260588242.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:46 Heat of formation + Delta-G solvation = 50.905776 kcal Electronic energy + Delta-G solvation = -12262.586921 eV Core-core repulsion = 10313.908690 eV Total energy + Delta-G solvation = -1948.678231 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.22047 -34.58392 -34.30816 -31.41017 -28.71753 -27.07581 -25.83165 -23.66175 -20.59952 -18.70478 -18.42276 -17.28195 -16.44337 -15.78666 -15.36810 -14.92520 -14.64444 -14.52313 -13.87183 -13.52136 -13.12053 -12.97704 -12.48269 -12.46403 -12.27261 -11.82661 -11.70315 -11.46766 -10.98934 -10.83301 -10.23265 -8.96549 -8.71985 -8.38921 -6.50846 0.89893 1.20981 1.25252 1.32760 1.43891 2.14357 2.85850 3.34086 3.80693 3.90667 4.15417 4.27013 4.39199 4.44575 4.58555 4.72802 4.78901 4.86688 4.95062 5.07253 5.13293 5.19397 5.27162 5.52256 6.00850 6.34111 6.45374 6.55109 7.16907 8.69423 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.030964 B = 0.021487 C = 0.017562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.057784 B = 1302.787561 C = 1594.009521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.530 5.530 3 C 0.037 3.963 4 C 0.195 3.805 5 C -0.533 4.533 6 H 0.041 0.959 7 C 0.025 3.975 8 N -0.933 5.933 9 Si 0.908 3.092 10 H -0.306 1.306 11 H -0.318 1.318 12 H -0.177 1.177 13 C -0.093 4.093 14 C -0.045 4.045 15 S -0.331 6.331 16 C -0.067 4.067 17 H 0.020 0.980 18 H 0.072 0.928 19 H 0.075 0.925 20 H 0.069 0.931 21 H 0.072 0.928 22 H 0.009 0.991 23 H 0.264 0.736 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.051 0.949 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.115 -3.114 -8.519 9.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.254 5.254 3 C -0.111 4.111 4 C 0.106 3.894 5 C -0.572 4.572 6 H 0.060 0.940 7 C -0.175 4.175 8 N -0.571 5.571 9 Si 0.743 3.257 10 H -0.238 1.238 11 H -0.249 1.249 12 H -0.101 1.101 13 C -0.132 4.132 14 C -0.193 4.193 15 S -0.107 6.107 16 C -0.213 4.213 17 H 0.039 0.961 18 H 0.091 0.909 19 H 0.093 0.907 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.028 0.972 23 H 0.073 0.927 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.151 0.849 28 H 0.068 0.932 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.235 -4.430 -9.183 11.041 hybrid contribution -1.236 1.219 1.951 2.612 sum 3.000 -3.211 -7.232 8.462 Atomic orbital electron populations 1.22967 0.89758 1.01856 0.99765 1.62939 1.06881 1.13981 1.41585 1.22190 1.00348 0.89135 0.99470 1.19513 0.92823 0.88494 0.88571 1.21649 1.00019 1.26748 1.08794 0.94027 1.26045 0.99045 0.97883 0.94496 1.70050 1.20777 1.38884 1.27431 0.87298 0.75538 0.77886 0.84973 1.23750 1.24859 1.10142 1.22132 0.93319 0.96506 1.01229 1.24245 0.98748 0.93431 1.02856 1.87228 1.09878 1.25218 1.88330 1.25240 0.97429 0.96895 1.01744 0.96135 0.90885 0.90673 0.91236 0.90931 0.97201 0.92656 0.89469 0.91024 0.90173 0.84882 0.93235 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.18 7.74 127.69 0.99 1.16 15 2 N -0.53 -20.77 4.73 -901.69 -4.26 -25.03 15 3 C 0.04 1.34 8.91 127.69 1.14 2.48 15 4 C 0.20 8.31 0.60 3.00 0.00 8.31 15 5 C -0.53 -28.07 6.83 25.60 0.17 -27.89 15 6 H 0.04 2.45 7.73 -2.91 -0.02 2.43 15 7 C 0.02 1.37 4.55 84.65 0.38 1.75 15 8 N -0.93 -56.73 13.96 21.45 0.30 -56.43 15 9 Si 0.91 43.13 21.17 68.60 1.45 44.58 15 10 H -0.31 -15.15 6.93 99.48 0.69 -14.46 15 11 H -0.32 -15.53 7.11 99.48 0.71 -14.82 15 12 H -0.18 -7.14 2.28 99.48 0.23 -6.91 15 13 C -0.09 -3.33 4.02 31.20 0.13 -3.21 15 14 C -0.04 -1.48 7.51 72.61 0.55 -0.94 15 15 S -0.33 -12.54 23.22 -56.49 -1.31 -13.85 15 16 C -0.07 -2.82 4.06 72.22 0.29 -2.52 15 17 H 0.02 0.93 2.91 -2.39 -0.01 0.92 15 18 H 0.07 2.44 7.74 -2.39 -0.02 2.43 15 19 H 0.08 2.64 5.74 -2.39 -0.01 2.63 15 20 H 0.07 2.27 6.94 -2.39 -0.02 2.26 15 21 H 0.07 2.22 7.96 -2.39 -0.02 2.20 15 22 H 0.01 0.41 6.98 -2.39 -0.02 0.39 15 23 H 0.26 15.39 8.31 -92.71 -0.77 14.62 15 24 H 0.09 2.83 7.96 -2.38 -0.02 2.81 15 25 H 0.07 2.61 7.45 -2.39 -0.02 2.60 15 26 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 27 H 0.13 3.37 8.14 -2.39 -0.02 3.35 15 28 H 0.05 2.37 1.82 -2.39 0.00 2.36 15 29 H 0.12 4.65 5.15 -2.39 -0.01 4.64 15 Total: -1.00 -61.82 216.60 0.47 -61.35 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.65 Total: 10.23 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 3.65 Total: -20.85 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -3.96 Total: -81.46 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.45 Total: 44.58 kcal Atomic # 16 Polarization: -12.54 SS G_CDS: -1.31 Total: -13.85 kcal Total: -61.82 0.47 -61.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260588242.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.255 kcal (2) G-P(sol) polarization free energy of solvation -61.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds