Wall clock time and date at job start Mon Mar 30 2020 02:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 N 1.46899 * 109.47429 * 59.99659 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 C 1.52581 * 109.22204 * 300.59584 * 12 9 7 14 14 C 1.53117 * 109.94540 * 168.96745 * 13 12 9 15 15 S 1.81740 * 108.81201 * 63.08094 * 14 13 12 16 16 C 1.81747 * 102.22205 * 306.71643 * 15 14 13 17 17 C 1.52582 * 109.22835 * 179.39791 * 12 9 7 18 18 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 19 19 H 1.00896 * 110.99761 * 60.00489 * 11 9 7 20 20 H 1.00898 * 110.99366 * 183.95380 * 11 9 7 21 21 H 1.08998 * 109.22495 * 59.99202 * 12 9 7 22 22 H 1.09001 * 109.38856 * 289.14907 * 13 12 9 23 23 H 1.08993 * 109.39865 * 48.85554 * 13 12 9 24 24 H 1.09007 * 109.60497 * 303.27041 * 14 13 12 25 25 H 1.09005 * 109.57801 * 182.87108 * 14 13 12 26 26 H 1.09004 * 109.57670 * 293.45673 * 16 15 14 27 27 H 1.08999 * 109.68628 * 173.13666 * 16 15 14 28 28 H 1.09002 * 109.38827 * 311.14462 * 17 12 9 29 29 H 1.09002 * 109.38338 * 70.94290 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 7 0.4068 -2.5762 -1.2014 12 6 2.2453 -3.6621 -0.0015 13 6 3.1300 -3.5668 -1.2409 14 6 4.2996 -4.5482 -1.1244 15 16 3.6409 -6.2411 -1.0695 16 6 2.4359 -6.1413 0.2874 17 6 1.4768 -4.9802 0.0125 18 1 -0.4850 -0.8401 -0.0004 19 1 0.9651 -2.5243 -2.0403 20 1 -0.1571 -3.4128 -1.1936 21 1 2.8690 -3.6008 0.8903 22 1 2.5408 -3.8085 -2.1255 23 1 3.5174 -2.5522 -1.3320 24 1 4.8588 -4.3440 -0.2112 25 1 4.9553 -4.4392 -1.9884 26 1 2.9587 -5.9683 1.2281 27 1 1.8734 -7.0730 0.3482 28 1 0.7157 -4.9471 0.7921 29 1 0.9975 -5.1298 -0.9550 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624920.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:01 Heat of formation + Delta-G solvation = -23.948826 kcal Electronic energy + Delta-G solvation = -11608.599679 eV Core-core repulsion = 9656.675509 eV Total energy + Delta-G solvation = -1951.924170 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.80925 -33.45366 -31.23764 -30.85413 -27.12306 -24.83640 -22.74440 -21.76827 -19.12745 -16.65741 -16.52114 -14.78546 -14.48802 -14.27461 -13.64219 -13.48212 -13.32052 -12.64341 -12.55181 -12.35344 -11.62700 -11.30749 -10.81477 -10.73331 -10.27688 -10.15493 -10.01282 -9.82480 -9.43618 -8.50102 -8.26267 -7.54158 -7.29661 -6.13966 -3.96866 2.00464 2.73131 3.47410 3.48588 3.67247 4.60749 5.00695 5.13211 5.18440 5.33872 5.49979 5.50823 5.64688 5.78837 5.91455 6.12645 6.15182 6.28481 6.31841 6.68590 6.83482 6.86205 7.26109 8.05264 8.34134 8.72120 8.83441 9.10225 9.87589 11.25573 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.057019 B = 0.009979 C = 0.009062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.947721 B = 2805.281274 C = 3089.093994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.036 3.964 3 Si 1.060 2.940 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.614 4.614 8 H 0.046 0.954 9 C 0.215 3.785 10 H 0.026 0.974 11 N -0.833 5.833 12 C -0.117 4.117 13 C -0.109 4.109 14 C -0.072 4.072 15 S -0.295 6.295 16 C -0.072 4.072 17 C -0.119 4.119 18 H 0.289 0.711 19 H 0.325 0.675 20 H 0.298 0.702 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 -9.218 -0.871 10.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.173 4.173 3 Si 0.890 3.110 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.653 4.653 8 H 0.064 0.936 9 C 0.106 3.894 10 H 0.043 0.957 11 N -0.362 5.362 12 C -0.138 4.138 13 C -0.147 4.147 14 C -0.221 4.221 15 S -0.070 6.070 16 C -0.220 4.220 17 C -0.158 4.158 18 H 0.102 0.898 19 H 0.137 0.863 20 H 0.109 0.891 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.086 0.914 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.104 -7.783 -1.227 9.387 hybrid contribution 0.571 -1.629 0.555 1.813 sum 5.675 -9.411 -0.672 11.010 Atomic orbital electron populations 1.70547 1.06880 1.32772 1.42492 1.25563 0.96642 1.01829 0.93303 0.83698 0.74980 0.76147 0.76198 1.20980 1.21823 1.21724 1.21758 0.93213 0.91319 1.59003 0.93594 1.19141 0.88873 0.91923 0.89421 0.95665 1.59379 1.29050 1.42174 1.05571 1.21840 0.98818 0.95706 0.97418 1.21724 0.94839 0.99573 0.98596 1.23534 1.00872 0.92680 1.04969 1.86521 1.52172 1.19153 1.49156 1.23404 0.98217 1.02485 0.97917 1.21837 0.97691 0.94072 1.02172 0.89788 0.86258 0.89095 0.92248 0.91970 0.88933 0.90319 0.88597 0.90324 0.88671 0.91365 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.86 13.51 55.43 0.75 -26.11 15 2 C 0.04 1.02 5.39 -17.82 -0.10 0.93 15 3 Si 1.06 24.98 29.90 -169.99 -5.08 19.90 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.61 -16.45 7.83 -34.44 -0.27 -16.72 15 8 H 0.05 1.22 6.72 -52.49 -0.35 0.87 15 9 C 0.22 5.05 2.06 -68.86 -0.14 4.91 15 10 H 0.03 0.66 8.01 -51.93 -0.42 0.25 15 11 N -0.83 -18.54 7.66 -5.65 -0.04 -18.59 15 12 C -0.12 -2.22 1.77 -91.05 -0.16 -2.38 15 13 C -0.11 -1.92 4.31 -26.89 -0.12 -2.04 15 14 C -0.07 -1.10 6.46 37.22 0.24 -0.86 15 15 S -0.30 -4.48 22.33 -107.50 -2.40 -6.88 15 16 C -0.07 -1.02 6.45 37.21 0.24 -0.78 15 17 C -0.12 -1.91 4.42 -26.90 -0.12 -2.03 15 18 H 0.29 8.72 6.39 -40.82 -0.26 8.46 15 19 H 0.32 7.07 7.42 -39.29 -0.29 6.78 15 20 H 0.30 5.87 7.66 -39.29 -0.30 5.57 15 21 H 0.06 1.19 8.08 -51.93 -0.42 0.77 15 22 H 0.06 1.10 7.14 -51.93 -0.37 0.73 15 23 H 0.09 1.83 6.24 -51.93 -0.32 1.51 15 24 H 0.08 1.18 8.14 -51.92 -0.42 0.76 15 25 H 0.10 1.32 8.14 -51.92 -0.42 0.90 15 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 28 H 0.07 1.09 8.09 -51.93 -0.42 0.67 15 29 H 0.07 1.09 7.25 -51.93 -0.38 0.72 15 LS Contribution 238.99 15.07 3.60 3.60 Total: -1.00 -28.79 238.99 -7.62 -36.41 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -4.02 Total: 10.63 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -0.42 Total: -18.97 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.71 Total: -44.69 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Atomic # 16 Polarization: -4.48 SS G_CDS: -2.40 Total: -6.88 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.79 -7.62 -36.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624920.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.461 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds