Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46905 * 110.99846 * 2 1 4 4 C 1.50694 * 109.38899 * 55.93260 * 3 2 1 5 5 H 1.08001 * 120.00166 * 239.91770 * 4 3 2 6 6 C 1.37877 * 120.00553 * 59.92242 * 4 3 2 7 7 N 1.31523 * 119.99456 * 352.95824 * 6 4 3 8 8 Si 1.86796 * 120.00552 * 172.95394 * 6 4 3 9 9 H 1.48499 * 109.46793 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47191 * 119.99979 * 8 6 4 11 11 H 1.48504 * 109.47117 * 240.00157 * 8 6 4 12 12 C 1.52578 * 109.39003 * 296.13041 * 3 2 1 13 13 C 1.52580 * 110.72900 * 169.18041 * 12 3 2 14 14 C 1.53093 * 109.95835 * 70.67108 * 13 12 3 15 15 S 1.81753 * 108.94882 * 296.91573 * 14 13 12 16 16 C 1.53099 * 109.38603 * 175.63752 * 3 2 1 17 17 H 1.08998 * 109.47004 * 306.08351 * 1 2 3 18 18 H 1.08998 * 109.46817 * 66.08167 * 1 2 3 19 19 H 1.08999 * 109.47334 * 186.08133 * 1 2 3 20 20 H 1.00896 * 110.99927 * 236.04410 * 2 1 3 21 21 H 0.96997 * 119.99323 * 180.02562 * 7 6 4 22 22 H 1.08999 * 109.23183 * 48.85386 * 12 3 2 23 23 H 1.09002 * 109.22760 * 289.49797 * 12 3 2 24 24 H 1.09003 * 109.38848 * 310.52449 * 13 12 3 25 25 H 1.08996 * 109.31335 * 190.77703 * 13 12 3 26 26 H 1.09002 * 109.57667 * 56.78656 * 14 13 12 27 27 H 1.08998 * 109.57594 * 177.04249 * 14 13 12 28 28 H 1.09001 * 109.57440 * 302.97941 * 16 3 2 29 29 H 1.08996 * 109.58012 * 63.23804 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.4314 2.1239 1.1775 5 1 0.8432 3.0154 1.0172 6 6 1.6661 1.6743 2.4596 7 7 2.2620 0.5177 2.6521 8 14 1.1381 2.7079 3.9233 9 1 0.4938 3.9559 3.4412 10 1 0.1721 1.9397 4.7489 11 1 2.3283 3.0494 4.7432 12 6 1.5852 2.0715 -1.2921 13 6 1.8806 3.5664 -1.2137 14 6 3.3925 3.8034 -1.2578 15 16 4.1530 3.0355 0.2035 16 6 3.5220 1.3299 0.1099 17 1 -0.3633 0.6052 0.8305 18 1 -0.3633 0.4167 -0.9394 19 1 -0.3634 -1.0219 0.1089 20 1 1.8306 -0.5261 -0.7813 21 1 2.4268 0.2013 3.5540 22 1 0.5178 1.9247 -1.4567 23 1 2.1389 1.6396 -2.1258 24 1 1.4786 3.9664 -0.2828 25 1 1.4104 4.0715 -2.0574 26 1 3.8060 3.3566 -2.1620 27 1 3.5945 4.8745 -1.2543 28 1 3.8087 0.7848 1.0092 29 1 3.9378 0.8329 -0.7665 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260835397.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = 5.772276 kcal Electronic energy + Delta-G solvation = -12050.132770 eV Core-core repulsion = 10099.497404 eV Total energy + Delta-G solvation = -1950.635366 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.49373 -33.09419 -31.84849 -29.04948 -26.26915 -25.08055 -23.54552 -21.25943 -19.11826 -16.21782 -15.25546 -14.75483 -14.49957 -14.00607 -13.09818 -12.96082 -12.69396 -12.40806 -12.04917 -11.51440 -11.24976 -10.80978 -10.60481 -10.55161 -10.40749 -10.38970 -9.80075 -9.57016 -8.83196 -8.67737 -8.31478 -6.86653 -6.47441 -5.80195 -3.90358 2.88868 3.37848 3.46834 3.49513 3.69398 4.53872 5.37447 5.49026 5.62762 5.82442 5.87809 6.08445 6.26808 6.31418 6.40263 6.43956 6.57857 6.62904 6.82282 7.00043 7.03579 7.22959 7.58404 7.96001 8.17882 8.54934 8.85467 9.15884 9.72805 11.20739 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.019303 C = 0.015257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.315052 B = 1450.195647 C = 1834.726271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.648 5.648 3 C 0.239 3.761 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.088 3.912 7 N -0.847 5.847 8 Si 0.876 3.124 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.284 1.284 12 C -0.148 4.148 13 C -0.112 4.112 14 C -0.077 4.077 15 S -0.271 6.271 16 C -0.041 4.041 17 H 0.077 0.923 18 H -0.009 1.009 19 H 0.034 0.966 20 H 0.295 0.705 21 H 0.253 0.747 22 H 0.056 0.944 23 H 0.031 0.969 24 H 0.092 0.908 25 H 0.043 0.957 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.129 0.871 29 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 2.338 -6.153 6.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.275 5.275 3 C 0.149 3.851 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.118 4.118 7 N -0.482 5.482 8 Si 0.705 3.295 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.210 1.210 12 C -0.188 4.188 13 C -0.151 4.151 14 C -0.226 4.226 15 S -0.046 6.046 16 C -0.190 4.190 17 H 0.096 0.904 18 H 0.009 0.991 19 H 0.053 0.947 20 H 0.110 0.890 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.111 0.889 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.146 0.854 29 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.686 2.585 -4.552 5.280 hybrid contribution -1.269 0.235 -1.025 1.649 sum -0.583 2.820 -5.577 6.277 Atomic orbital electron populations 1.21891 0.89856 0.99030 0.98955 1.60671 1.05947 1.15390 1.45484 1.18645 0.89727 0.85421 0.91320 1.20668 1.34419 1.09690 0.89503 0.92415 1.24808 0.94724 0.94036 0.98219 1.70075 1.40596 1.17334 1.20191 0.86799 0.78227 0.80851 0.83645 1.19935 1.21583 1.21000 1.22271 1.00637 0.95948 0.99955 1.21668 0.93696 0.97236 1.02498 1.23226 0.98976 1.02185 0.98205 1.86287 1.64086 1.16030 1.38159 1.23503 1.00029 0.91079 1.04387 0.90435 0.99081 0.94676 0.88991 0.93733 0.92527 0.95032 0.88947 0.93862 0.91936 0.89652 0.85363 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 10.02 60.07 0.60 1.72 15 2 N -0.65 -14.69 5.56 -108.53 -0.60 -15.29 15 3 C 0.24 5.48 0.33 -132.92 -0.04 5.44 15 4 C -0.50 -12.82 4.64 -34.44 -0.16 -12.98 15 5 H 0.06 1.51 6.04 -52.49 -0.32 1.19 15 6 C 0.09 2.33 5.15 -17.82 -0.09 2.24 15 7 N -0.85 -23.25 10.95 55.43 0.61 -22.64 15 8 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 15 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 12 C -0.15 -2.99 4.61 -27.16 -0.13 -3.11 15 13 C -0.11 -2.10 5.58 -26.90 -0.15 -2.25 15 14 C -0.08 -1.40 6.45 37.21 0.24 -1.16 15 15 S -0.27 -5.90 21.47 -107.50 -2.31 -8.21 15 16 C -0.04 -0.94 5.31 37.21 0.20 -0.75 15 17 H 0.08 1.82 6.72 -51.93 -0.35 1.47 15 18 H -0.01 -0.18 6.47 -51.93 -0.34 -0.51 15 19 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.30 6.11 8.82 -39.29 -0.35 5.77 15 21 H 0.25 6.79 8.31 -40.82 -0.34 6.45 15 22 H 0.06 1.14 6.10 -51.93 -0.32 0.82 15 23 H 0.03 0.60 8.08 -51.93 -0.42 0.18 15 24 H 0.09 1.94 5.74 -51.93 -0.30 1.64 15 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 26 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 28 H 0.13 3.36 6.41 -51.93 -0.33 3.02 15 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 LS Contribution 234.33 15.07 3.53 3.53 Total: -1.00 -26.91 234.33 -7.29 -34.20 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.96 Total: 3.11 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 0.47 Total: -10.86 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.00 Total: -37.93 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -5.90 SS G_CDS: -2.31 Total: -8.21 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -26.91 -7.29 -34.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260835397.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.976 kcal (2) G-P(sol) polarization free energy of solvation -26.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds