Wall clock time and date at job start Mon Mar 30 2020 02:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46905 * 110.99846 * 2 1 4 4 C 1.50694 * 109.38899 * 55.93260 * 3 2 1 5 5 H 1.08001 * 120.00166 * 239.91770 * 4 3 2 6 6 C 1.37877 * 120.00553 * 59.92242 * 4 3 2 7 7 N 1.31523 * 119.99456 * 352.95824 * 6 4 3 8 8 Si 1.86796 * 120.00552 * 172.95394 * 6 4 3 9 9 H 1.48499 * 109.46793 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47191 * 119.99979 * 8 6 4 11 11 H 1.48504 * 109.47117 * 240.00157 * 8 6 4 12 12 C 1.52578 * 109.39003 * 296.13041 * 3 2 1 13 13 C 1.52580 * 110.72900 * 169.18041 * 12 3 2 14 14 C 1.53093 * 109.95835 * 70.67108 * 13 12 3 15 15 S 1.81753 * 108.94882 * 296.91573 * 14 13 12 16 16 C 1.53099 * 109.38603 * 175.63752 * 3 2 1 17 17 H 1.08998 * 109.47004 * 306.08351 * 1 2 3 18 18 H 1.08998 * 109.46817 * 66.08167 * 1 2 3 19 19 H 1.08999 * 109.47334 * 186.08133 * 1 2 3 20 20 H 1.00896 * 110.99927 * 236.04410 * 2 1 3 21 21 H 0.96997 * 119.99323 * 180.02562 * 7 6 4 22 22 H 1.08999 * 109.23183 * 48.85386 * 12 3 2 23 23 H 1.09002 * 109.22760 * 289.49797 * 12 3 2 24 24 H 1.09003 * 109.38848 * 310.52449 * 13 12 3 25 25 H 1.08996 * 109.31335 * 190.77703 * 13 12 3 26 26 H 1.09002 * 109.57667 * 56.78656 * 14 13 12 27 27 H 1.08998 * 109.57594 * 177.04249 * 14 13 12 28 28 H 1.09001 * 109.57440 * 302.97941 * 16 3 2 29 29 H 1.08996 * 109.58012 * 63.23804 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.4314 2.1239 1.1775 5 1 0.8432 3.0154 1.0172 6 6 1.6661 1.6743 2.4596 7 7 2.2620 0.5177 2.6521 8 14 1.1381 2.7079 3.9233 9 1 0.4938 3.9559 3.4412 10 1 0.1721 1.9397 4.7489 11 1 2.3283 3.0494 4.7432 12 6 1.5852 2.0715 -1.2921 13 6 1.8806 3.5664 -1.2137 14 6 3.3925 3.8034 -1.2578 15 16 4.1530 3.0355 0.2035 16 6 3.5220 1.3299 0.1099 17 1 -0.3633 0.6052 0.8305 18 1 -0.3633 0.4167 -0.9394 19 1 -0.3634 -1.0219 0.1089 20 1 1.8306 -0.5261 -0.7813 21 1 2.4268 0.2013 3.5540 22 1 0.5178 1.9247 -1.4567 23 1 2.1389 1.6396 -2.1258 24 1 1.4786 3.9664 -0.2828 25 1 1.4104 4.0715 -2.0574 26 1 3.8060 3.3566 -2.1620 27 1 3.5945 4.8745 -1.2543 28 1 3.8087 0.7848 1.0092 29 1 3.9378 0.8329 -0.7665 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260835397.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:40 Heat of formation + Delta-G solvation = -11.042019 kcal Electronic energy + Delta-G solvation = -12050.861892 eV Core-core repulsion = 10099.497404 eV Total energy + Delta-G solvation = -1951.364489 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.21701 -34.71390 -33.79229 -30.78612 -27.90493 -27.00822 -25.27111 -22.82508 -20.93765 -18.04171 -17.01063 -16.60672 -16.24075 -15.68034 -14.91133 -14.66418 -14.29305 -14.01608 -13.67279 -13.35248 -13.01101 -12.73122 -12.43570 -12.29830 -12.09430 -12.01318 -11.63863 -11.27261 -10.68095 -10.37950 -10.29511 -8.58708 -8.18406 -7.80770 -5.92924 1.28488 1.42365 1.48880 1.54059 2.02555 2.55143 3.39533 3.98236 4.11067 4.23239 4.33226 4.54695 4.70024 4.74461 4.76072 4.84780 4.95143 5.04536 5.19539 5.30732 5.43977 5.48417 5.75063 5.98260 6.29741 6.73209 7.00217 7.36955 7.70974 9.17699 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.029961 B = 0.019303 C = 0.015257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.315052 B = 1450.195647 C = 1834.726271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.668 5.668 3 C 0.234 3.766 4 C -0.496 4.496 5 H 0.049 0.951 6 C 0.050 3.950 7 N -0.870 5.870 8 Si 0.917 3.083 9 H -0.271 1.271 10 H -0.291 1.291 11 H -0.292 1.292 12 C -0.143 4.143 13 C -0.110 4.110 14 C -0.063 4.063 15 S -0.312 6.312 16 C -0.034 4.034 17 H 0.048 0.952 18 H 0.010 0.990 19 H 0.048 0.952 20 H 0.308 0.692 21 H 0.246 0.754 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.479 3.137 -7.869 8.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.296 5.296 3 C 0.144 3.856 4 C -0.535 4.535 5 H 0.067 0.933 6 C -0.153 4.153 7 N -0.507 5.507 8 Si 0.745 3.255 9 H -0.196 1.196 10 H -0.217 1.217 11 H -0.218 1.218 12 C -0.183 4.183 13 C -0.149 4.149 14 C -0.211 4.211 15 S -0.087 6.087 16 C -0.183 4.183 17 H 0.067 0.933 18 H 0.028 0.972 19 H 0.067 0.933 20 H 0.124 0.876 21 H 0.056 0.944 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.111 0.889 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.334 3.393 -6.274 7.141 hybrid contribution -1.174 0.017 -0.551 1.297 sum -0.840 3.410 -6.825 7.676 Atomic orbital electron populations 1.21772 0.89066 0.99437 0.98640 1.60526 1.06854 1.15642 1.46605 1.18642 0.89442 0.85651 0.91908 1.20847 1.33160 1.09121 0.90382 0.93331 1.25262 0.95347 0.94714 0.99944 1.70186 1.42204 1.18435 1.19858 0.86166 0.77455 0.79997 0.81856 1.19597 1.21748 1.21833 1.22161 1.00757 0.96717 0.98677 1.21608 0.94274 0.96387 1.02641 1.23317 0.98049 1.03254 0.96484 1.86386 1.64844 1.16028 1.41420 1.23308 1.00211 0.91589 1.03184 0.93341 0.97163 0.93346 0.87617 0.94404 0.92532 0.93471 0.91482 0.90396 0.89791 0.87266 0.88923 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.49 10.02 127.69 1.28 3.77 15 2 N -0.67 -29.52 5.56 -497.29 -2.76 -32.29 15 3 C 0.23 10.43 0.33 2.67 0.00 10.43 15 4 C -0.50 -25.01 4.64 25.60 0.12 -24.89 15 5 H 0.05 2.51 6.04 -2.91 -0.02 2.49 15 6 C 0.05 2.67 5.15 84.65 0.44 3.11 15 7 N -0.87 -48.44 10.95 21.45 0.23 -48.20 15 8 Si 0.92 43.78 29.54 68.60 2.03 45.81 15 9 H -0.27 -12.67 7.11 99.48 0.71 -11.97 15 10 H -0.29 -13.85 7.11 99.48 0.71 -13.14 15 11 H -0.29 -14.20 7.11 99.48 0.71 -13.49 15 12 C -0.14 -5.35 4.61 30.31 0.14 -5.21 15 13 C -0.11 -3.76 5.58 30.49 0.17 -3.59 15 14 C -0.06 -2.05 6.45 72.01 0.46 -1.59 15 15 S -0.31 -13.16 21.47 -56.49 -1.21 -14.38 15 16 C -0.03 -1.53 5.31 72.02 0.38 -1.14 15 17 H 0.05 2.24 6.72 -2.39 -0.02 2.23 15 18 H 0.01 0.37 6.47 -2.39 -0.02 0.36 15 19 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 20 H 0.31 12.23 8.82 -89.70 -0.79 11.43 15 21 H 0.25 13.55 8.31 -92.71 -0.77 12.78 15 22 H 0.06 2.10 6.10 -2.39 -0.01 2.08 15 23 H 0.05 1.61 8.08 -2.39 -0.02 1.59 15 24 H 0.07 2.67 5.74 -2.39 -0.01 2.65 15 25 H 0.08 2.17 8.14 -2.39 -0.02 2.15 15 26 H 0.08 2.43 8.14 -2.39 -0.02 2.41 15 27 H 0.11 3.07 8.14 -2.39 -0.02 3.06 15 28 H 0.09 4.91 6.41 -2.39 -0.02 4.89 15 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 Total: -1.00 -56.51 234.33 1.63 -54.89 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.35 Total: 13.29 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 2.99 Total: -19.12 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -2.53 Total: -80.49 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -13.16 SS G_CDS: -1.21 Total: -14.38 kcal Total: -56.51 1.63 -54.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260835397.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.844 kcal (2) G-P(sol) polarization free energy of solvation -56.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds