Wall clock time and date at job start Mon Mar 30 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47479 * 2 1 4 4 C 1.50704 * 109.47418 * 239.99458 * 2 1 3 5 5 H 1.07993 * 119.99757 * 240.00236 * 4 2 1 6 6 C 1.37871 * 119.99427 * 60.00169 * 4 2 1 7 7 N 1.31513 * 120.00733 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99451 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46980 * 90.00067 * 8 6 4 10 10 H 1.48502 * 109.46863 * 210.00017 * 8 6 4 11 11 H 1.48498 * 109.47215 * 329.99723 * 8 6 4 12 12 N 1.46906 * 109.47244 * 119.99510 * 2 1 3 13 13 C 1.46906 * 110.99737 * 63.95639 * 12 2 1 14 14 C 1.46895 * 111.00243 * 187.91482 * 12 2 1 15 15 C 1.55886 * 110.82380 * 175.20273 * 14 12 2 16 16 S 1.83080 * 82.48321 * 217.27798 * 15 14 12 17 17 C 1.55966 * 110.86254 * 61.57485 * 14 12 2 18 18 H 1.08995 * 109.47160 * 293.33569 * 1 2 3 19 19 H 1.09003 * 109.46659 * 53.33977 * 1 2 3 20 20 H 1.08997 * 109.46875 * 173.33574 * 1 2 3 21 21 H 0.96999 * 119.99967 * 179.97438 * 7 6 4 22 22 H 1.09000 * 109.46766 * 183.96004 * 13 12 2 23 23 H 1.08997 * 109.47301 * 303.95765 * 13 12 2 24 24 H 1.08997 * 109.46724 * 63.95807 * 13 12 2 25 25 H 1.09002 * 110.39820 * 298.37296 * 14 12 2 26 26 H 1.09001 * 114.38051 * 103.86110 * 15 14 12 27 27 H 1.09006 * 114.38066 * 330.68949 * 15 14 12 28 28 H 1.08995 * 114.34436 * 29.29517 * 17 14 12 29 29 H 1.09001 * 114.43394 * 256.10343 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6035 8 14 2.3216 -1.1207 -4.0078 9 1 1.3429 -2.1620 -4.4117 10 1 2.4868 -0.1417 -5.1122 11 1 3.6295 -1.7586 -3.7120 12 7 2.0197 -0.6924 1.1995 13 6 1.6275 -2.1081 1.1872 14 6 3.4758 -0.5507 1.3317 15 6 3.9752 -1.1823 2.6665 16 16 5.1141 0.2509 2.6388 17 6 3.8763 0.9490 1.4844 18 1 -0.3633 0.4071 0.9436 19 1 -0.3633 0.6136 -0.8244 20 1 -0.3633 -1.0207 -0.1193 21 1 0.7089 1.1610 -3.4845 22 1 1.9415 -2.5802 2.1181 23 1 0.5447 -2.1843 1.0884 24 1 2.1053 -2.6101 0.3459 25 1 3.9805 -1.0014 0.4771 26 1 4.4655 -2.1490 2.5511 27 1 3.2448 -1.1610 3.4753 28 1 3.1177 1.5704 1.9601 29 1 4.3010 1.3960 0.5856 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130895.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:04 Heat of formation + Delta-G solvation = 24.522142 kcal Electronic energy + Delta-G solvation = -11671.262439 eV Core-core repulsion = 9721.440128 eV Total energy + Delta-G solvation = -1949.822311 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.75039 -33.65873 -31.70046 -28.68613 -26.65032 -25.24671 -24.47606 -20.59952 -19.07838 -16.38694 -16.21339 -15.47770 -14.75737 -13.81378 -13.63696 -13.08838 -12.67044 -12.35742 -11.85192 -11.54854 -11.39269 -11.13392 -11.05632 -10.89094 -10.67751 -10.30277 -10.05948 -9.96687 -9.26800 -9.00715 -8.46252 -7.44497 -7.28146 -6.06086 -4.18368 2.11104 2.47987 3.22930 3.30703 3.33084 4.34719 4.77869 5.00996 5.21988 5.25873 5.60140 5.81074 5.83253 6.09336 6.12720 6.38917 6.54461 6.67920 6.89107 6.98678 7.12534 7.45872 7.65270 7.84720 8.06658 8.17909 8.33921 8.89973 9.49715 10.95108 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.039809 B = 0.011360 C = 0.010519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.197084 B = 2464.129788 C = 2661.275120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.204 3.796 3 H 0.042 0.958 4 C -0.545 4.545 5 H 0.056 0.944 6 C 0.070 3.930 7 N -0.885 5.885 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.535 5.535 13 C 0.032 3.968 14 C 0.067 3.933 15 C -0.053 4.053 16 S -0.354 6.354 17 C -0.031 4.031 18 H 0.015 0.985 19 H 0.080 0.920 20 H 0.028 0.972 21 H 0.262 0.738 22 H 0.041 0.959 23 H 0.063 0.937 24 H 0.031 0.969 25 H 0.076 0.924 26 H 0.098 0.902 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.680 -2.639 6.314 7.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.098 3.902 3 H 0.060 0.940 4 C -0.584 4.584 5 H 0.074 0.926 6 C -0.133 4.133 7 N -0.523 5.523 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.260 5.260 13 C -0.117 4.117 14 C -0.044 4.044 15 C -0.202 4.202 16 S -0.130 6.130 17 C -0.180 4.180 18 H 0.034 0.966 19 H 0.099 0.901 20 H 0.047 0.953 21 H 0.072 0.928 22 H 0.060 0.940 23 H 0.082 0.918 24 H 0.050 0.950 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.558 -1.923 7.134 8.201 hybrid contribution -0.327 -1.185 -2.191 2.513 sum 3.231 -3.108 4.943 6.673 Atomic orbital electron populations 1.21762 0.97554 0.99989 0.99255 1.19302 0.92440 0.94292 0.84215 0.94041 1.21663 1.32143 1.12965 0.91678 0.92604 1.24890 0.94755 0.94768 0.98871 1.69886 1.36268 1.22629 1.23550 0.86680 0.79262 0.79574 0.83020 1.20660 1.21128 1.20034 1.62927 1.08447 1.12466 1.42127 1.22165 1.01149 0.89694 0.98648 1.23918 0.92352 0.92463 0.95655 1.24883 0.97060 0.97177 1.01031 1.88156 1.34607 1.24401 1.65787 1.24813 0.95403 0.99038 0.98711 0.96581 0.90138 0.95303 0.92837 0.93977 0.91798 0.95003 0.90612 0.88335 0.87511 0.87398 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.56 37.16 0.32 -2.66 15 2 C 0.20 4.81 2.20 -68.86 -0.15 4.66 15 3 H 0.04 1.06 6.96 -51.93 -0.36 0.70 15 4 C -0.55 -14.05 7.14 -34.44 -0.25 -14.29 15 5 H 0.06 1.45 5.85 -52.49 -0.31 1.14 15 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 15 7 N -0.89 -24.31 11.40 55.43 0.63 -23.67 15 8 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 15 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 12 N -0.53 -10.75 4.63 -266.64 -1.24 -11.98 15 13 C 0.03 0.60 8.69 60.07 0.52 1.12 15 14 C 0.07 1.24 2.25 -64.59 -0.15 1.09 15 15 C -0.05 -0.82 7.41 38.70 0.29 -0.53 15 16 S -0.35 -5.97 24.06 -107.50 -2.59 -8.55 15 17 C -0.03 -0.56 7.34 38.74 0.28 -0.27 15 18 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 19 H 0.08 2.06 6.28 -51.93 -0.33 1.73 15 20 H 0.03 0.65 6.75 -51.93 -0.35 0.30 15 21 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 22 H 0.04 0.66 7.18 -51.93 -0.37 0.29 15 23 H 0.06 1.20 6.37 -51.93 -0.33 0.87 15 24 H 0.03 0.63 6.39 -51.93 -0.33 0.30 15 25 H 0.08 1.56 7.10 -51.93 -0.37 1.19 15 26 H 0.10 1.36 8.14 -51.93 -0.42 0.94 15 27 H 0.11 1.57 8.14 -51.93 -0.42 1.14 15 28 H 0.11 1.88 8.14 -51.93 -0.42 1.46 15 29 H 0.11 1.90 8.14 -51.93 -0.42 1.48 15 LS Contribution 241.71 15.07 3.64 3.64 Total: -1.00 -26.60 241.71 -7.79 -34.40 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -4.00 Total: -0.39 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 0.77 Total: -9.12 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: -0.60 Total: -35.66 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -5.97 SS G_CDS: -2.59 Total: -8.55 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -26.60 -7.79 -34.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130895.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.917 kcal (2) G-P(sol) polarization free energy of solvation -26.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds