Wall clock time and date at job start Mon Mar 30 2020 02:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47479 * 2 1 4 4 C 1.50704 * 109.47418 * 239.99458 * 2 1 3 5 5 H 1.07993 * 119.99757 * 240.00236 * 4 2 1 6 6 C 1.37871 * 119.99427 * 60.00169 * 4 2 1 7 7 N 1.31513 * 120.00733 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99451 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46980 * 90.00067 * 8 6 4 10 10 H 1.48502 * 109.46863 * 210.00017 * 8 6 4 11 11 H 1.48498 * 109.47215 * 329.99723 * 8 6 4 12 12 N 1.46906 * 109.47244 * 119.99510 * 2 1 3 13 13 C 1.46906 * 110.99737 * 63.95639 * 12 2 1 14 14 C 1.46895 * 111.00243 * 187.91482 * 12 2 1 15 15 C 1.55886 * 110.82380 * 175.20273 * 14 12 2 16 16 S 1.83080 * 82.48321 * 217.27798 * 15 14 12 17 17 C 1.55966 * 110.86254 * 61.57485 * 14 12 2 18 18 H 1.08995 * 109.47160 * 293.33569 * 1 2 3 19 19 H 1.09003 * 109.46659 * 53.33977 * 1 2 3 20 20 H 1.08997 * 109.46875 * 173.33574 * 1 2 3 21 21 H 0.96999 * 119.99967 * 179.97438 * 7 6 4 22 22 H 1.09000 * 109.46766 * 183.96004 * 13 12 2 23 23 H 1.08997 * 109.47301 * 303.95765 * 13 12 2 24 24 H 1.08997 * 109.46724 * 63.95807 * 13 12 2 25 25 H 1.09002 * 110.39820 * 298.37296 * 14 12 2 26 26 H 1.09001 * 114.38051 * 103.86110 * 15 14 12 27 27 H 1.09006 * 114.38066 * 330.68949 * 15 14 12 28 28 H 1.08995 * 114.34436 * 29.29517 * 17 14 12 29 29 H 1.09001 * 114.43394 * 256.10343 * 17 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4826 7 7 0.9429 0.8295 -2.6035 8 14 2.3216 -1.1207 -4.0078 9 1 1.3429 -2.1620 -4.4117 10 1 2.4868 -0.1417 -5.1122 11 1 3.6295 -1.7586 -3.7120 12 7 2.0197 -0.6924 1.1995 13 6 1.6275 -2.1081 1.1872 14 6 3.4758 -0.5507 1.3317 15 6 3.9752 -1.1823 2.6665 16 16 5.1141 0.2509 2.6388 17 6 3.8763 0.9490 1.4844 18 1 -0.3633 0.4071 0.9436 19 1 -0.3633 0.6136 -0.8244 20 1 -0.3633 -1.0207 -0.1193 21 1 0.7089 1.1610 -3.4845 22 1 1.9415 -2.5802 2.1181 23 1 0.5447 -2.1843 1.0884 24 1 2.1053 -2.6101 0.3459 25 1 3.9805 -1.0014 0.4771 26 1 4.4655 -2.1490 2.5511 27 1 3.2448 -1.1610 3.4753 28 1 3.1177 1.5704 1.9601 29 1 4.3010 1.3960 0.5856 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130895.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:04 Heat of formation + Delta-G solvation = 8.026103 kcal Electronic energy + Delta-G solvation = -11671.977761 eV Core-core repulsion = 9721.440128 eV Total energy + Delta-G solvation = -1950.537633 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.37062 -35.43330 -33.46066 -30.42648 -28.07317 -27.21655 -26.05542 -22.28287 -20.77066 -18.16376 -17.82319 -17.04087 -16.52298 -15.46831 -15.18789 -14.88535 -14.08189 -13.90836 -13.43336 -13.20820 -13.07464 -12.83230 -12.66811 -12.55695 -12.43890 -12.13248 -11.92720 -11.70320 -11.14642 -10.49087 -10.45829 -9.02068 -8.76341 -8.05497 -6.25346 0.77024 1.13263 1.36987 1.40130 1.47331 2.39985 3.15882 3.28409 3.61343 3.77870 4.22133 4.47348 4.57789 4.60201 4.70408 4.88234 4.96562 5.05246 5.13518 5.22320 5.26425 5.55133 5.70994 5.97736 6.16432 6.32752 6.56376 6.93577 7.45557 8.92023 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.039809 B = 0.011360 C = 0.010519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.197084 B = 2464.129788 C = 2661.275120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.208 3.792 3 H 0.018 0.982 4 C -0.548 4.548 5 H 0.051 0.949 6 C 0.024 3.976 7 N -0.911 5.911 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.531 5.531 13 C 0.034 3.966 14 C 0.063 3.937 15 C -0.032 4.032 16 S -0.355 6.355 17 C -0.035 4.035 18 H 0.032 0.968 19 H 0.054 0.946 20 H 0.028 0.972 21 H 0.261 0.739 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.015 0.985 25 H 0.052 0.948 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 -3.769 7.265 8.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 H 0.036 0.964 4 C -0.587 4.587 5 H 0.069 0.931 6 C -0.176 4.176 7 N -0.551 5.551 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.256 5.256 13 C -0.115 4.115 14 C -0.048 4.048 15 C -0.180 4.180 16 S -0.131 6.131 17 C -0.183 4.183 18 H 0.051 0.949 19 H 0.073 0.927 20 H 0.047 0.953 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.078 0.922 24 H 0.033 0.967 25 H 0.070 0.930 26 H 0.139 0.861 27 H 0.141 0.859 28 H 0.127 0.873 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.000 -3.065 8.099 9.539 hybrid contribution -0.443 -0.847 -2.441 2.622 sum 3.557 -3.912 5.658 7.744 Atomic orbital electron populations 1.21596 0.97413 0.99461 0.99039 1.19092 0.92499 0.93297 0.85063 0.96417 1.21900 1.31553 1.12638 0.92656 0.93107 1.25553 0.95176 0.95481 1.01420 1.70000 1.37340 1.23767 1.23948 0.85804 0.78717 0.78542 0.80052 1.20296 1.21083 1.19867 1.62890 1.09552 1.13256 1.39852 1.22214 1.00812 0.88619 0.99835 1.24049 0.90966 0.93063 0.96752 1.24952 0.96537 0.97430 0.99119 1.88181 1.34645 1.25125 1.65158 1.24733 0.95941 0.98820 0.98814 0.94944 0.92679 0.95311 0.92948 0.90378 0.92221 0.96659 0.92967 0.86082 0.85865 0.87252 0.88600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.56 71.98 0.62 -4.81 15 2 C 0.21 9.80 2.20 44.17 0.10 9.89 15 3 H 0.02 0.93 6.96 -2.39 -0.02 0.91 15 4 C -0.55 -28.25 7.14 25.60 0.18 -28.06 15 5 H 0.05 2.63 5.85 -2.91 -0.02 2.61 15 6 C 0.02 1.26 5.30 84.65 0.45 1.71 15 7 N -0.91 -50.58 11.40 21.45 0.24 -50.33 15 8 Si 0.94 42.49 29.54 68.60 2.03 44.52 15 9 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 15 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 12 N -0.53 -20.59 4.63 -997.50 -4.62 -25.22 15 13 C 0.03 1.18 8.69 127.69 1.11 2.29 15 14 C 0.06 2.22 2.25 46.94 0.11 2.33 15 15 C -0.03 -0.89 7.41 72.98 0.54 -0.35 15 16 S -0.36 -11.30 24.06 -56.49 -1.36 -12.65 15 17 C -0.03 -1.21 7.34 73.01 0.54 -0.67 15 18 H 0.03 1.35 8.14 -2.39 -0.02 1.33 15 19 H 0.05 2.84 6.28 -2.39 -0.01 2.83 15 20 H 0.03 1.29 6.75 -2.39 -0.02 1.27 15 21 H 0.26 13.92 8.31 -92.71 -0.77 13.15 15 22 H 0.08 2.16 7.18 -2.39 -0.02 2.14 15 23 H 0.06 2.13 6.37 -2.39 -0.02 2.11 15 24 H 0.01 0.57 6.39 -2.39 -0.02 0.56 15 25 H 0.05 2.12 7.10 -2.39 -0.02 2.10 15 26 H 0.12 2.85 8.14 -2.39 -0.02 2.83 15 27 H 0.12 3.09 8.14 -2.38 -0.02 3.07 15 28 H 0.11 3.76 8.14 -2.39 -0.02 3.74 15 29 H 0.10 3.49 8.14 -2.39 -0.02 3.47 15 Total: -1.00 -55.39 241.71 1.05 -54.34 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.12 Total: 7.03 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 3.64 Total: -17.68 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -4.38 Total: -75.55 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: -11.30 SS G_CDS: -1.36 Total: -12.65 kcal Total: -55.39 1.05 -54.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130895.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.365 kcal (2) G-P(sol) polarization free energy of solvation -55.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds