Wall clock time and date at job start Mon Mar 30 2020 02:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 110.39108 * 2 1 4 4 S 1.83118 * 110.30857 * 237.91014 * 2 1 3 5 5 C 1.83997 * 95.85194 * 221.41764 * 4 2 1 6 6 C 1.55152 * 100.90461 * 35.28586 * 5 4 2 7 7 C 1.52941 * 108.96416 * 318.56247 * 6 5 4 8 8 C 1.50700 * 108.88547 * 150.89641 * 7 6 5 9 9 H 1.07995 * 120.00196 * 126.09787 * 8 7 6 10 10 C 1.37878 * 120.00175 * 306.09276 * 8 7 6 11 11 N 1.31510 * 120.00475 * 201.95565 * 10 8 7 12 12 Si 1.86804 * 119.99525 * 21.96303 * 10 8 7 13 13 H 1.48494 * 109.47607 * 82.78669 * 12 10 8 14 14 H 1.48501 * 109.47213 * 322.78088 * 12 10 8 15 15 H 1.48504 * 109.46801 * 202.78396 * 12 10 8 16 16 C 1.52997 * 108.88502 * 269.44761 * 7 6 5 17 17 N 1.46904 * 109.47485 * 298.41426 * 16 7 6 18 18 H 1.08997 * 109.47208 * 295.84658 * 1 2 3 19 19 H 1.09000 * 109.46921 * 55.84778 * 1 2 3 20 20 H 1.08999 * 109.47027 * 175.84175 * 1 2 3 21 21 H 1.09004 * 111.13034 * 277.38020 * 5 4 2 22 22 H 1.08996 * 111.13106 * 153.20080 * 5 4 2 23 23 H 1.09009 * 109.60196 * 198.63010 * 6 5 4 24 24 H 1.08999 * 109.60128 * 78.49652 * 6 5 4 25 25 H 0.97004 * 120.00153 * 179.97438 * 11 10 8 26 26 H 1.08993 * 109.47247 * 58.42266 * 16 7 6 27 27 H 1.09006 * 109.46835 * 178.41873 * 16 7 6 28 28 H 1.00896 * 111.00242 * 184.53143 * 17 16 7 29 29 H 1.00899 * 111.00282 * 308.48960 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 16 2.1656 -0.9123 -1.4550 5 6 3.5180 -1.7786 -0.5571 6 6 2.8475 -2.0204 0.8210 7 6 2.0643 -0.7686 1.2192 8 6 0.9015 -1.1761 2.0869 9 1 0.7648 -0.7194 3.0559 10 6 0.0122 -2.1320 1.6436 11 7 -1.1987 -2.1903 2.1533 12 14 0.5276 -3.3443 0.3191 13 1 1.2767 -4.4663 0.9393 14 1 1.3954 -2.6568 -0.6706 15 1 -0.6800 -3.8733 -0.3645 16 6 2.9817 0.1545 2.0235 17 7 3.4155 -0.5317 3.2479 18 1 -0.3633 0.4480 0.9248 19 1 -0.3633 0.5769 -0.8504 20 1 -0.3633 -1.0250 -0.0745 21 1 4.3967 -1.1409 -0.4601 22 1 3.7707 -2.7214 -1.0421 23 1 3.6132 -2.2262 1.5691 24 1 2.1686 -2.8704 0.7532 25 1 -1.8244 -2.8626 1.8411 26 1 3.8540 0.4129 1.4233 27 1 2.4410 1.0632 2.2885 28 1 3.9624 0.0826 3.8323 29 1 2.6253 -0.9032 3.7535 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261266500.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:26 Heat of formation + Delta-G solvation = 8.540854 kcal Electronic energy + Delta-G solvation = -12232.654552 eV Core-core repulsion = 10282.139240 eV Total energy + Delta-G solvation = -1950.515311 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 201.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.66825 -34.64882 -33.69759 -32.52712 -28.65256 -26.89544 -24.09310 -23.62328 -20.64946 -18.38562 -17.76455 -17.11240 -16.49568 -15.77422 -15.14577 -14.78674 -14.41298 -14.10730 -13.90399 -13.74344 -13.39273 -12.83834 -12.51848 -12.25404 -11.92492 -11.75298 -11.47495 -11.31057 -10.61248 -10.55076 -10.25868 -9.33195 -8.35644 -7.99839 -6.20136 1.07733 1.38529 1.52362 1.55091 1.70552 2.47929 3.06881 3.85768 4.00877 4.11723 4.23298 4.35564 4.40237 4.61994 4.71619 4.78610 4.85324 5.03864 5.09920 5.15676 5.30115 5.60472 5.65964 5.82151 6.27054 6.44852 6.77068 6.87689 7.41326 8.81496 Molecular weight = 201.09amu Principal moments of inertia in cm(-1) A = 0.027992 B = 0.024555 C = 0.018849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.049206 B = 1140.010784 C = 1485.126720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.016 4.016 3 H 0.098 0.902 4 S -0.322 6.322 5 C -0.057 4.057 6 C -0.120 4.120 7 C 0.040 3.960 8 C -0.505 4.505 9 H 0.043 0.957 10 C 0.061 3.939 11 N -0.926 5.926 12 Si 0.771 3.229 13 H -0.307 1.307 14 H -0.089 1.089 15 H -0.342 1.342 16 C 0.092 3.908 17 N -0.847 5.847 18 H 0.058 0.942 19 H 0.041 0.959 20 H 0.046 0.954 21 H 0.114 0.886 22 H 0.111 0.889 23 H 0.098 0.902 24 H 0.034 0.966 25 H 0.257 0.743 26 H 0.073 0.927 27 H 0.013 0.987 28 H 0.340 0.660 29 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.224 4.317 -4.132 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.145 4.145 3 H 0.116 0.884 4 S -0.095 6.095 5 C -0.204 4.204 6 C -0.158 4.158 7 C 0.038 3.962 8 C -0.543 4.543 9 H 0.061 0.939 10 C -0.139 4.139 11 N -0.564 5.564 12 Si 0.608 3.392 13 H -0.237 1.237 14 H -0.015 1.015 15 H -0.274 1.274 16 C -0.039 4.039 17 N -0.378 5.378 18 H 0.077 0.923 19 H 0.060 0.940 20 H 0.064 0.936 21 H 0.133 0.867 22 H 0.130 0.870 23 H 0.116 0.884 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.152 0.848 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.111 3.755 -5.777 12.236 hybrid contribution -1.081 -0.441 1.688 2.052 sum 9.029 3.314 -4.090 10.452 Atomic orbital electron populations 1.21710 0.93347 1.01193 0.99809 1.24018 0.98614 1.00089 0.91793 0.88381 1.87297 1.41542 1.57919 1.22763 1.24494 0.97007 1.02862 0.96076 1.22747 0.98982 0.98223 0.95879 1.19022 0.93069 0.91973 0.92140 1.20637 1.08167 1.22334 1.03133 0.93854 1.25348 0.93677 0.98294 0.96563 1.70131 1.05477 1.34763 1.46022 0.89177 0.79614 0.81848 0.88512 1.23747 1.01535 1.27355 1.21648 0.96526 0.93669 0.92085 1.58766 1.28505 1.40788 1.09742 0.92332 0.93995 0.93570 0.86737 0.87043 0.88397 0.94804 0.93458 0.90905 0.96829 0.84800 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.42 7.77 71.98 0.56 -3.86 15 2 C -0.02 -0.62 3.26 30.83 0.10 -0.52 15 3 H 0.10 3.32 7.63 -2.39 -0.02 3.30 15 4 S -0.32 -11.45 19.85 -56.49 -1.12 -12.57 15 5 C -0.06 -1.74 7.04 72.72 0.51 -1.23 15 6 C -0.12 -4.54 4.55 31.31 0.14 -4.40 15 7 C 0.04 1.61 0.40 -52.71 -0.02 1.59 15 8 C -0.51 -25.39 5.99 25.60 0.15 -25.23 15 9 H 0.04 2.40 7.16 -2.91 -0.02 2.38 15 10 C 0.06 3.37 3.39 84.66 0.29 3.66 15 11 N -0.93 -55.94 13.96 21.45 0.30 -55.64 15 12 Si 0.77 38.64 22.10 68.60 1.52 40.15 15 13 H -0.31 -15.98 7.10 99.48 0.71 -15.27 15 14 H -0.09 -3.81 2.14 83.94 0.18 -3.63 15 15 H -0.34 -18.87 7.11 99.48 0.71 -18.16 15 16 C 0.09 3.10 5.32 86.30 0.46 3.56 15 17 N -0.85 -27.29 8.64 -186.72 -1.61 -28.90 15 18 H 0.06 2.75 7.21 -2.39 -0.02 2.74 15 19 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.05 2.25 3.75 -2.39 -0.01 2.24 15 21 H 0.11 2.86 8.14 -2.38 -0.02 2.84 15 22 H 0.11 3.02 8.14 -2.39 -0.02 3.00 15 23 H 0.10 3.57 7.03 -2.38 -0.02 3.55 15 24 H 0.03 1.49 1.53 -2.39 0.00 1.48 15 25 H 0.26 15.28 8.31 -92.71 -0.77 14.51 15 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 27 H 0.01 0.47 8.14 -2.38 -0.02 0.45 15 28 H 0.34 8.79 9.08 -89.70 -0.81 7.98 15 29 H 0.34 12.76 7.12 -89.69 -0.64 12.13 15 Total: -1.00 -60.66 218.15 0.46 -60.20 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -0.81 Total: 23.19 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 2.19 Total: -26.43 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -1.31 Total: -84.54 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.52 Total: 40.15 kcal Atomic # 16 Polarization: -11.45 SS G_CDS: -1.12 Total: -12.57 kcal Total: -60.66 0.46 -60.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261266500.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.740 kcal (2) G-P(sol) polarization free energy of solvation -60.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds