Wall clock time and date at job start Mon Mar 30 2020 02:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00060 * 2 1 4 4 H 1.48496 * 109.46674 * 83.69315 * 3 2 1 5 5 H 1.48495 * 109.47119 * 203.69249 * 3 2 1 6 6 H 1.48498 * 109.46932 * 323.69337 * 3 2 1 7 7 C 1.37879 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99770 * 14.50060 * 7 2 1 9 9 C 1.50700 * 120.00239 * 194.50535 * 7 2 1 10 10 C 1.52998 * 109.54020 * 273.37224 * 9 7 2 11 11 O 1.42908 * 109.46923 * 294.86265 * 10 9 7 12 12 N 1.46300 * 113.99900 * 184.99778 * 11 10 9 13 13 C 1.53169 * 109.54679 * 153.19078 * 9 7 2 14 14 C 1.53286 * 109.06404 * 297.03164 * 13 9 7 15 15 O 1.42910 * 109.45791 * 302.44076 * 14 13 9 16 16 C 1.42904 * 114.09224 * 61.15906 * 15 14 13 17 17 C 1.53089 * 109.41627 * 298.83836 * 16 15 14 18 18 H 0.97004 * 120.00056 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47627 * 54.86520 * 10 9 7 20 20 H 1.09006 * 109.47024 * 174.87059 * 10 9 7 21 21 H 1.00903 * 110.99695 * 184.95400 * 12 11 10 22 22 H 1.00900 * 111.00568 * 308.90901 * 12 11 10 23 23 H 1.09006 * 109.51935 * 57.01817 * 13 9 7 24 24 H 1.09004 * 109.52375 * 177.20548 * 13 9 7 25 25 H 1.08995 * 109.45638 * 182.45166 * 14 13 9 26 26 H 1.08994 * 109.46855 * 62.44169 * 14 13 9 27 27 H 1.09004 * 109.47326 * 178.85636 * 16 15 14 28 28 H 1.08998 * 109.49016 * 58.83553 * 16 15 14 29 29 H 1.08992 * 109.52607 * 297.70475 * 17 16 15 30 30 H 1.09005 * 109.57061 * 177.54593 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3634 2.1233 1.3916 5 1 3.6069 1.4054 -0.5626 6 1 1.5195 2.6106 -0.8290 7 6 2.0045 -1.1941 -0.0005 8 1 1.4903 -2.1143 -0.2351 9 6 3.4755 -1.2150 0.3263 10 6 4.2860 -0.9571 -0.9454 11 8 4.0905 -2.0361 -1.8618 12 7 4.9125 -1.9479 -3.0689 13 6 3.8522 -2.5819 0.9058 14 6 3.0930 -2.7950 2.2203 15 8 3.4029 -1.7341 3.1263 16 6 3.0298 -0.4374 2.6557 17 6 3.7860 -0.1289 1.3609 18 1 -0.4850 0.8401 0.0004 19 1 3.9549 -0.0258 -1.4048 20 1 5.3438 -0.8819 -0.6931 21 1 4.6815 -2.6849 -3.7183 22 1 4.8215 -1.0417 -3.5030 23 1 3.5836 -3.3648 0.1965 24 1 4.9251 -2.6138 1.0959 25 1 3.3893 -3.7470 2.6605 26 1 2.0210 -2.8033 2.0234 27 1 3.2805 0.3088 3.4097 28 1 1.9570 -0.4146 2.4645 29 1 4.8574 -0.1113 1.5601 30 1 3.4710 0.8412 0.9763 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261295970.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:26 Heat of formation + Delta-G solvation = -26.298006 kcal Electronic energy + Delta-G solvation = -14195.546048 eV Core-core repulsion = 11800.767139 eV Total energy + Delta-G solvation = -2394.778909 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 201.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.96006 -36.16783 -34.07085 -31.79182 -30.39629 -29.16333 -26.30686 -24.76133 -23.02733 -21.67907 -18.89875 -16.37267 -16.13463 -15.79533 -15.61320 -15.02145 -14.51624 -14.30809 -13.68272 -13.10183 -12.72438 -12.35122 -11.95961 -11.60785 -11.48356 -11.00908 -10.65093 -10.16702 -9.96342 -9.88486 -9.65988 -9.10853 -8.95084 -8.59142 -8.28189 -8.24762 -6.19898 -4.12721 3.14078 3.20639 3.32195 3.52272 4.26126 4.69570 5.08849 5.56851 5.74004 5.90632 5.92639 5.99825 6.16120 6.22817 6.26274 6.35183 6.38315 6.56704 6.79296 6.81762 6.91190 7.09035 7.13323 7.26028 7.66867 7.83132 8.03427 8.45689 8.88947 9.44275 10.93162 Molecular weight = 201.12amu Principal moments of inertia in cm(-1) A = 0.024738 B = 0.021190 C = 0.014649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.596195 B = 1321.058019 C = 1910.889702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.284 1.284 5 H -0.264 1.264 6 H -0.305 1.305 7 C -0.500 4.500 8 H 0.078 0.922 9 C 0.048 3.952 10 C 0.066 3.934 11 O -0.213 6.213 12 N -0.693 5.693 13 C -0.123 4.123 14 C 0.069 3.931 15 O -0.395 6.395 16 C 0.072 3.928 17 C -0.148 4.148 18 H 0.264 0.736 19 H 0.045 0.955 20 H 0.027 0.973 21 H 0.355 0.645 22 H 0.330 0.670 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.012 -0.667 -0.235 7.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.130 4.130 3 Si 0.723 3.277 4 H -0.213 1.213 5 H -0.191 1.191 6 H -0.234 1.234 7 C -0.538 4.538 8 H 0.097 0.903 9 C 0.045 3.955 10 C -0.012 4.012 11 O -0.228 6.228 12 N -0.256 5.256 13 C -0.161 4.161 14 C -0.008 4.008 15 O -0.314 6.314 16 C -0.005 4.005 17 C -0.185 4.185 18 H 0.074 0.926 19 H 0.063 0.937 20 H 0.045 0.955 21 H 0.167 0.833 22 H 0.139 0.861 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.407 -0.897 0.450 7.475 hybrid contribution -0.442 1.521 -1.100 1.928 sum 6.965 0.624 -0.650 7.023 Atomic orbital electron populations 1.69936 1.06238 1.26961 1.49420 1.25055 0.94601 0.98727 0.94641 0.87009 0.79310 0.84101 0.77256 1.21274 1.19092 1.23431 1.20763 0.90213 0.95378 1.47401 0.90350 1.18566 0.96436 0.91938 0.88520 1.23207 0.97228 0.89242 0.91532 1.90782 1.61900 1.45802 1.24323 1.64485 1.47901 1.08294 1.04916 1.21988 0.98102 0.98965 0.97039 1.22522 1.00186 0.88581 0.89479 1.87722 1.83991 1.15498 1.44178 1.22434 1.00112 0.83973 0.93946 1.22489 0.99444 0.98849 0.97699 0.92577 0.93719 0.95514 0.83308 0.86135 0.91169 0.93684 0.90931 0.91760 0.90913 0.90986 0.92644 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.96 55.43 0.77 -25.23 16 2 C 0.07 1.96 4.45 -17.82 -0.08 1.89 16 3 Si 0.89 21.27 22.83 -169.99 -3.88 17.39 16 4 H -0.28 -6.59 7.03 56.52 0.40 -6.19 16 5 H -0.26 -5.94 4.72 56.52 0.27 -5.67 16 6 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.50 -13.30 6.56 -34.44 -0.23 -13.53 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 9 C 0.05 1.10 0.34 -155.48 -0.05 1.04 16 10 C 0.07 1.44 4.88 37.16 0.18 1.62 16 11 O -0.21 -4.59 10.92 -13.92 -0.15 -4.75 16 12 N -0.69 -11.52 10.83 60.35 0.65 -10.87 16 13 C -0.12 -2.58 4.68 -26.50 -0.12 -2.70 16 14 C 0.07 1.39 6.62 37.31 0.25 1.64 16 15 O -0.39 -8.37 10.77 -35.23 -0.38 -8.75 16 16 C 0.07 1.54 6.24 37.20 0.23 1.78 16 17 C -0.15 -3.23 4.09 -26.59 -0.11 -3.34 16 18 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 19 H 0.04 1.01 5.19 -51.93 -0.27 0.74 16 20 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.36 4.89 9.25 -39.29 -0.36 4.53 16 22 H 0.33 4.89 9.11 -39.29 -0.36 4.53 16 23 H 0.07 1.49 7.68 -51.93 -0.40 1.09 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.06 1.42 7.38 -51.93 -0.38 1.03 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.07 1.72 6.58 -51.93 -0.34 1.38 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.05 1.13 1.37 -51.93 -0.07 1.06 16 LS Contribution 229.65 15.07 3.46 3.46 Total: -1.00 -29.56 229.65 -3.45 -33.01 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.00 Total: 7.35 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 0.07 Total: -11.60 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 1.43 Total: -36.10 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.53 Total: -13.50 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -3.88 Total: 17.39 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -29.56 -3.45 -33.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261295970.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.707 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds